LOCUS AEE75458.1 445 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pectin lyase-like superfamily protein protein.
ACCESSION CP002686-2581
PROTEIN_ID AEE75458.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G14040"
/inference="Similar to RNA sequence,
EST:INSD:BP814843.1,INSD:BP836119.1,INSD:BP838952.1,
INSD:EG525414.1,INSD:BP638723.1,INSD:BP589539.1,
INSD:AV532925.1,INSD:DR242040.1,INSD:DR242034.1,
INSD:BP636711.1,INSD:DR242035.1,INSD:ES106973.1,
INSD:DR378260.1,INSD:DR242032.1,INSD:BP659190.1,
INSD:ES081756.1,INSD:AV533635.1,INSD:BP831168.1,
INSD:AA728703.1,INSD:BP650450.1,INSD:BP817844.1,
INSD:BP644647.1,INSD:DR382584.1,INSD:DR382143.1,
INSD:BP789214.1,INSD:ES206128.1,INSD:BP815552.1,
INSD:EG525413.1,INSD:DR242038.1,INSD:DR242033.1,
INSD:BP649109.1,INSD:BP822769.1,INSD:BP815506.1,
INSD:DR348706.1,INSD:DR242036.1,INSD:DR242039.1,
INSD:DR242037.1,INSD:AV825745.1,INSD:BP590898.1,
INSD:BP593496.1,INSD:DR363555.1,INSD:Z18197.1,
INSD:AV792221.1"
/inference="Similar to RNA sequence,
mRNA:INSD:DQ108878.1,INSD:BX823616.1,INSD:AY114635.1,
INSD:X73222.1,INSD:AY062447.1"
/note="Pectin lyase-like superfamily protein; FUNCTIONS
IN: polygalacturonase activity; INVOLVED IN: carbohydrate
metabolic process; LOCATED IN: endomembrane system;
EXPRESSED IN: male gametophyte; CONTAINS InterPro
DOMAIN/s: Pectin lyase fold/virulence factor
(InterPro:IPR011050), Pectin lyase fold
(InterPro:IPR012334), Glycoside hydrolase, family 28
(InterPro:IPR000743), Parallel beta-helix repeat
(InterPro:IPR006626); BEST Arabidopsis thaliana protein
match is: Pectin lyase-like superfamily protein
(TAIR:AT3G07850.1); Has 4149 Blast hits to 4131 proteins
in 554 species: Archae - 6; Bacteria - 1102; Metazoa - 14;
Fungi - 1429; Plants - 1473; Viruses - 4; Other Eukaryotes
- 121 (source: NCBI BLink)."
/db_xref="TAIR:AT3G14040"
/db_xref="Araport:AT3G14040"
intron_pos 89:0 (1/3)
intron_pos 192:0 (2/3)
intron_pos 364:0 (3/3)
BEGIN
1 MVGSHKASGV LLVLLVVMAT TIANGTPVVD TAKNAATAVE DTAKNAATAV GGAAASVGAK
61 VTGAKPGGAS LDVKASGAKG DGKTDDSAAF AAAWKEACAA GSTITVPKGE YLVESLEFKG
121 PCKGPVTLEL NGNFKAPATV KTTKPHAGWI DFENLADFTL NGNKAIFDGQ GSLAWKANDC
181 AKTGKCNSLP INIRFTGLTN SKINSITSTN SKLFHMNILN CKNITLTDIG IDAPPESLNT
241 DGIHIGRSNG VNLIGAKIKT GDDCVSIGDG TENLIVENVE CGPGHGISIG SLGRYPNEQP
301 VKGVTVRKCL IKNTDNGVRI KTWPGSPPGI ASNILFEDIT MDNVSLPVLI DQEYCPYGHC
361 KAGVPSKVKL SDVTIKNIKG TSATKVAVKL MCSKGVPCTN IALSDINLVH NGKEGPAVSA
421 CSNIKPILSG KLVPAACTEV AKPGP
//