LOCUS AEE75454.1 595 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana CTC-interacting domain 4 protein.
ACCESSION CP002686-2576
PROTEIN_ID AEE75454.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="CID4"
/locus_tag="AT3G14010"
/gene_synonym="CTC-interacting domain 4"
/inference="Similar to RNA sequence,
EST:INSD:EG501851.1,INSD:BP603719.1,INSD:EL089457.1,
INSD:EL101482.1,INSD:ES197954.1,INSD:EL193752.1,
INSD:ES204056.1,INSD:BP618477.1,INSD:EG445808.1,
INSD:EL035104.1,INSD:EL016081.1,INSD:AV783170.1,
INSD:EG521252.1,INSD:EG521253.1,INSD:EG445820.1,
INSD:ES203458.1,INSD:EL101408.1,INSD:EG514031.1,
INSD:EH881584.1,INSD:DR240216.1,INSD:BP785888.1,
INSD:ES186065.1,INSD:ES031327.1,INSD:ES045765.1,
INSD:EG521256.1,INSD:EL299676.1,INSD:BP781962.1,
INSD:BP601733.1,INSD:EH890411.1,INSD:BP603557.1,
INSD:EG521255.1,INSD:EL069217.1,INSD:DR227175.1,
INSD:EL332420.1,INSD:AV548638.1,INSD:EG514533.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY079365.1"
/note="CTC-interacting domain 4 (CID4); FUNCTIONS IN:
protein binding; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro
DOMAIN/s: LsmAD domain (InterPro:IPR009604), Ataxin-2,
C-terminal (InterPro:IPR009818); BEST Arabidopsis thaliana
protein match is: CTC-interacting domain 3
(TAIR:AT1G54170.1); Has 13157 Blast hits to 6515 proteins
in 672 species: Archae - 9; Bacteria - 1467; Metazoa -
3492; Fungi - 1698; Plants - 664; Viruses - 94; Other
Eukaryotes - 5733 (source: NCBI BLink)."
/db_xref="TAIR:AT3G14010"
/db_xref="Araport:AT3G14010"
intron_pos 33:1 (1/13)
intron_pos 85:1 (2/13)
intron_pos 131:0 (3/13)
intron_pos 194:2 (4/13)
intron_pos 254:0 (5/13)
intron_pos 326:0 (6/13)
intron_pos 359:2 (7/13)
intron_pos 380:0 (8/13)
intron_pos 390:1 (9/13)
intron_pos 473:0 (10/13)
intron_pos 525:0 (11/13)
intron_pos 551:0 (12/13)
intron_pos 586:0 (13/13)
BEGIN
1 MSIPQSKSSS NGFPLKRGET EEVLHKTNTS NTVFNGEAGS LKRLSLDRLV YFTTCKIGHH
61 VEVHLRNGSV YTGIFHAANV EKDFGIILKM ACLIKDGTLR GHKSRSEFVR KPPSKTFIIP
121 ADELVQVIAK DLSVSSNNMS NAVQGEKPSE LLTDSSISQS YHVDRERQLQ RWVPDETIPH
181 GADLENVFDN PWNRKWNQFE VNKSLFGVKS TFDEDLYTTR LERGPQTKQL EEHAQKIARE
241 IEAETTRDIH VAEERGLQLN ENFDFDEEAR YSSVRPVTGF GDSGFDLEDN ALLDTCNDLT
301 FGGSSTSDGQ KPASSGKGCE ELRVSGDSQS SRKNKNVDQS CSTSKQQSKD FPAAGSNISE
361 SQLDEQRRKN NEEVSHNNRS AEESTSGHGD IKEGAKSGGG ASSVSKAVTE REREASQVSS
421 KTKSESSFGQ SASRSSESRP GPSTSSRPGL SPSSSIGSMA SSEKSTLNPN AKEFKLNPKA
481 KSFKPLQSAA APPQSPIADA SFYYPGPSHV PVQQMPGMPP VNYGLPPYPG NQPQMMYHPQ
541 AYYHPNGQPQ YPQQQMIPGQ QQQQMIPGQQ HPRPVYYMHP PPYPQDMPYH NKGRE
//