LOCUS AEE75428.1 738 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Root hair defective 3 GTP-binding
protein (RHD3) protein.
ACCESSION CP002686-2543
PROTEIN_ID AEE75428.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="RHD3"
/locus_tag="AT3G13870"
/gene_synonym="GOLGI MUTANT 8"
/gene_synonym="GOM8"
/gene_synonym="ROOT HAIR DEFECTIVE 3"
/inference="Similar to RNA sequence,
EST:INSD:BP610201.1,INSD:EG487129.1,INSD:EL017741.1,
INSD:BP614461.1,INSD:EG476265.1,INSD:ES154339.1,
INSD:EH878016.1,INSD:BP565555.1,INSD:AV801420.1,
INSD:AA598086.1,INSD:ES104744.1,INSD:AV558070.1,
INSD:Z29807.1,INSD:AV810403.1,INSD:BP567741.1,
INSD:BP794548.1,INSD:EL203918.1,INSD:BP572378.1,
INSD:BP583975.1,INSD:CD529008.1,INSD:BP608665.1,
INSD:EL038821.1,INSD:Z29808.1,INSD:BP795750.1,
INSD:W43567.1,INSD:EL159708.1,INSD:EL000469.1,
INSD:BP625294.1,INSD:AV812364.1,INSD:ES212501.1,
INSD:AV791182.1,INSD:BP792576.1,INSD:BP579834.1,
INSD:BP572688.1,INSD:BP590264.1,INSD:BP579848.1,
INSD:ES178450.1,INSD:EL974956.1,INSD:ES182603.1,
INSD:AV810628.1,INSD:AA394422.1,INSD:BP568933.1,
INSD:BP577796.1,INSD:BP572794.1,INSD:BP574209.1,
INSD:CD533690.1,INSD:BP616092.1,INSD:AA650662.1,
INSD:EL092367.1,INSD:BP581085.1,INSD:EL152719.1,
INSD:BP606088.1,INSD:BP574443.1,INSD:AV793048.1,
INSD:ES101081.1,INSD:AV796076.1,INSD:AV532672.1,
INSD:BP655404.1,INSD:ES070796.1,INSD:EL136135.1,
INSD:EL120017.1,INSD:BP623862.1,INSD:EL142882.1,
INSD:BP608422.1,INSD:BP581587.1,INSD:EL000432.1,
INSD:EL090832.1,INSD:CD529342.1,INSD:ES011090.1,
INSD:EL051552.1,INSD:W43610.1,INSD:EL215955.1,
INSD:EH834089.1,INSD:AV802052.1,INSD:BP601208.1,
INSD:EL147910.1,INSD:EL005161.1,INSD:EG476220.1,
INSD:ES184345.1,INSD:EH806175.1,INSD:AV813411.1,
INSD:EL202819.1,INSD:F15335.1,INSD:BP808028.1,
INSD:BP778095.1"
/inference="Similar to RNA sequence, mRNA:INSD:AK230324.1"
/note="ROOT HAIR DEFECTIVE 3 (RHD3); FUNCTIONS IN: GTP
binding; INVOLVED IN: root epidermal cell differentiation,
plant-type cell wall biogenesis, ER to Golgi
vesicle-mediated transport, actin cytoskeleton
organization, cell tip growth; LOCATED IN: endoplasmic
reticulum, plasma membrane, cytoplasm; EXPRESSED IN: 25
plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: Root hair defective 3
GTP-binding (InterPro:IPR008803); BEST Arabidopsis
thaliana protein match is: Root hair defective 3
GTP-binding protein (RHD3) (TAIR:AT1G72960.1); Has 35333
Blast hits to 34131 proteins in 2444 species: Archae -
798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink)."
/db_xref="TAIR:AT3G13870"
/db_xref="Araport:AT3G13870"
intron_pos 7:2 (1/20)
intron_pos 42:0 (2/20)
intron_pos 65:2 (3/20)
intron_pos 87:0 (4/20)
intron_pos 109:0 (5/20)
intron_pos 125:0 (6/20)
intron_pos 146:0 (7/20)
intron_pos 165:0 (8/20)
intron_pos 218:0 (9/20)
intron_pos 241:0 (10/20)
intron_pos 271:2 (11/20)
intron_pos 298:0 (12/20)
intron_pos 353:1 (13/20)
intron_pos 395:0 (14/20)
intron_pos 482:2 (15/20)
intron_pos 515:0 (16/20)
intron_pos 569:0 (17/20)
intron_pos 604:0 (18/20)
intron_pos 635:2 (19/20)
intron_pos 668:0 (20/20)
BEGIN
1 MHLEEGMSQT TKGIWIARCA GIEPCTVVMD LEGTDGRERG EDDTAFEKQS ALFALAVSDI
61 VLINMWCHDI GREQAANKPL LKTVFQVMMR LFSPRKTTLM FVIRDKTRTP LENLEPVLRE
121 DIQKIWDSVP KPQAHKETPL SDFFNVEVVA LSSYEEKEEQ FKEQVYNLRQ RFFQSVAPGG
181 LAGDRRGVVP ANAFAFSAKQ MWQVIKDNKD LDLPAHKVMV ATVRCEEIAN EKFSSFIANE
241 NWRELEEAVQ SGPVSGFGRK LSSILQASLS EYDTEATYFE ESVRSSKRQQ LQEKLLQLVQ
301 PTFQDVLGHL RAGALENFKN AFEKALDAGE GFSSSAKSCA QSCISKFDKG CEEAVIEQAK
361 WDTSKTREKL ERDIEAHISS VRTAKLAELT TLYESKLNVA LSGPVEALLD GANDETWPAI
421 RKLLRREGEL AVYGLSNALS GFEMDEETRS KMLADLENYA RGIVETKAKE EAGRAMMRMK
481 DRFATIFSHD SDSMPRVWTG KEDIRAITKM ARSASLKLLS VMAVIRLDDE LDNIEKTLTL
541 ALFNSTGNNA TSKSISTIDS LASSTWEKVA PEKTLITPVQ CKSLWRQFKN ETEYTVTQAI
601 SAQEANRRNN NWLPPPWAIL ALVVLGFNEF MTLLRNPLWL LVLFVGYLVS KALWVQLNIS
661 GEFQNGVLPG LLSLSTKFIP TVMNLLKKLA EEGQAPPTNS NQSMNSTAQS EVTTNGESSS
721 SSSSGSSPAK NVPIDTSA
//