LOCUS AEE75391.1 216 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana TRAF-like superfamily protein protein.
ACCESSION CP002686-2484
PROTEIN_ID AEE75391.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G13672"
/gene_synonym="SINA2"
/inference="Similar to RNA sequence,
EST:INSD:EL298844.1,INSD:EL208375.1,INSD:AV783321.1,
INSD:BP614066.1,INSD:CB258535.1,INSD:F13720.1,
INSD:AI997561.1,INSD:EL226980.1,INSD:CB258534.1,
INSD:CB254652.1,INSD:CB258500.1,INSD:BP583764.1,
INSD:ES010871.1,INSD:EL122950.1,INSD:ES207077.1,
INSD:CB258536.1,INSD:EL284488.1,INSD:EL050695.1,
INSD:ES216255.1,INSD:EL168439.1,INSD:AA597514.1,
INSD:ES077960.1,INSD:EH851738.1,INSD:EH869572.1,
INSD:AV822531.1,INSD:ES208881.1,INSD:BP671632.1,
INSD:ES111153.1,INSD:EH848642.1,INSD:ES156591.1,
INSD:ES170096.1,INSD:AA597418.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX825281.1,INSD:BX825351.1,INSD:AY059135.1,
INSD:AF370175.1"
/note="TRAF-like superfamily protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: multicellular
organismal development, ubiquitin-dependent protein
catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 11
plant structures; EXPRESSED DURING: LP.06 six leaves
visible, LP.04 four leaves visible, 4 anthesis, petal
differentiation and expansion stage; CONTAINS InterPro
DOMAIN/s: TRAF-like (InterPro:IPR008974),
Seven-in-absentia protein, TRAF-like domain
(InterPro:IPR018121), Seven-in-absentia protein, sina
(InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST
Arabidopsis thaliana protein match is: seven in absentia
of Arabidopsis 2 (TAIR:AT3G58040.1); Has 478 Blast hits to
478 proteins in 76 species: Archae - 0; Bacteria - 0;
Metazoa - 245; Fungi - 0; Plants - 224; Viruses - 0; Other
Eukaryotes - 9 (source: NCBI BLink)."
/db_xref="TAIR:AT3G13672"
/db_xref="Araport:AT3G13672"
intron_pos 34:0 (1/2)
intron_pos 104:0 (2/2)
BEGIN
1 MEPRINDLQV ESRVHELLDF PVHTNQISSA IYECPNDHIE NPKKKPYNCP HSGAKCDVTG
61 DIQRLLLHLR NDHNVEMSDG RSFSHRYVHH DPKHLHHATW MLTLLDCCGR KFCLYFEAFH
121 LRKTPMYMAF MQFMGDEEEA MSFSYSLQVG GNGRKLTWQG VPRSIRDSHK TVRDSQDGLI
181 ITRKLALFFS TDNNTTDKEL KLKVSGRVWR EQPVSI
//