LOCUS AEE75375.1 262 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana SC35-like splicing factor 30A protein.
ACCESSION CP002686-2462
PROTEIN_ID AEE75375.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="SCL30A"
/locus_tag="AT3G13570"
/gene_synonym="At-SCL30A"
/gene_synonym="SC35-like splicing factor 30A"
/inference="Similar to RNA sequence,
EST:INSD:DR334047.1,INSD:DR334046.1,INSD:DR334042.1,
INSD:AV821570.1,INSD:EL185184.1,INSD:N65012.1,
INSD:BP629986.1,INSD:CK118836.1,INSD:DR334037.1,
INSD:AV543260.1,INSD:EL263424.1,INSD:AV558321.1,
INSD:EL036575.1,INSD:AV441250.1,INSD:AV558270.1,
INSD:DR334039.1,INSD:T76199.1,INSD:T20857.1,
INSD:EL175477.1,INSD:DR334035.1,INSD:DR334030.1,
INSD:DR334044.1,INSD:R84197.1,INSD:ES008262.1,
INSD:CK121389.1,INSD:EL972627.1,INSD:DR334049.1,
INSD:DR334031.1,INSD:AI100019.1,INSD:F14414.1,
INSD:EL071231.1,INSD:ES168228.1,INSD:AV442660.1,
INSD:DR334038.1,INSD:DR334048.1,INSD:T76208.1,
INSD:DR334041.1,INSD:EH809725.1,INSD:EL265788.1,
INSD:ES215755.1,INSD:AV542952.1,INSD:DR375326.1,
INSD:ES139111.1,INSD:DR334033.1,INSD:DR334045.1,
INSD:DR334032.1,INSD:BP644325.1,INSD:AV520925.1,
INSD:DR334029.1,INSD:DR334043.1,INSD:BP831728.1,
INSD:EL159872.1,INSD:AV782070.1,INSD:ES142307.1,
INSD:DR334050.1,INSD:EL980290.1,INSD:F14436.1,
INSD:AV527452.1,INSD:DR334034.1,INSD:EG493407.1,
INSD:BP655975.1,INSD:AV534787.1,INSD:DR334036.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AF370268.1,INSD:AJ293800.1,INSD:AY063026.1"
/note="SC35-like splicing factor 30A (SCL30A); FUNCTIONS
IN: RNA binding, nucleotide binding, nucleic acid binding;
INVOLVED IN: nuclear mRNA splicing, via spliceosome, RNA
splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 26
plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: SC35-like splicing factor 33 (TAIR:AT1G55310.3);
Has 39411 Blast hits to 22154 proteins in 1003 species:
Archae - 84; Bacteria - 1991; Metazoa - 19033; Fungi -
3968; Plants - 4828; Viruses - 731; Other Eukaryotes -
8776 (source: NCBI BLink)."
/db_xref="TAIR:AT3G13570"
/db_xref="Araport:AT3G13570"
intron_pos 49:2 (1/4)
intron_pos 75:2 (2/4)
intron_pos 131:2 (3/4)
intron_pos 175:2 (4/4)
BEGIN
1 MRGRSYTPSP PRGYGRRGRS PSPRGRFGGS RDSDLPTSLL VRNLRHDCRQ EDLRRPFEQF
61 GPVKDIYLPR DYYTGDPRGF GFIQFMDPAD AAEAKHQMDG YLLLGRELTV VFAEENRKKP
121 TEMRTRDRGG RSNRFQDRRR SPPRYSRSPP PRRGRRSRSR SRGYNSPPAK RHQSRSVSPQ
181 DRRYEKERSY SRSPPHNGSR VRSGSPGRVK SHSRSPRRSV SPRKNRSYTP EQARSQSPVP
241 RQSRSPTPVP RGAQNGDRSP SQ
//