LOCUS AEE75356.1 196 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana TATA binding protein 1 protein.
ACCESSION CP002686-2440
PROTEIN_ID AEE75356.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="TBP1"
/locus_tag="AT3G13445"
/gene_synonym="TATA binding protein 1"
/gene_synonym="TFIID-1"
/gene_synonym="TRANSCRIPTION FACTOR IID-1"
/inference="Similar to RNA sequence,
EST:INSD:BE524817.1,INSD:BP780239.1,INSD:ES004265.1,
INSD:EG432577.1,INSD:ES104215.1,INSD:EG505107.1,
INSD:EG505108.1,INSD:BP603945.1,INSD:AV530688.1,
INSD:BP657203.1,INSD:BP630042.1,INSD:EL316115.1,
INSD:EG502841.1,INSD:ES011100.1,INSD:BP611607.1,
INSD:ES001032.1,INSD:EG429219.1,INSD:EG432578.1,
INSD:T88071.1,INSD:DR288701.1,INSD:EG432590.1,
INSD:DR288700.1,INSD:EL205882.1,INSD:BP787290.1,
INSD:EL140123.1,INSD:AU228848.1,INSD:EL015419.1,
INSD:ES179392.1,INSD:AI099541.1,INSD:BP599489.1,
INSD:AV534217.1,INSD:BP613390.1,INSD:EL128206.1,
INSD:ES029304.1,INSD:DR375878.1,INSD:BP560857.2,
INSD:BP665788.1,INSD:EG429214.1"
/note="TATA binding protein 1 (TBP1); FUNCTIONS IN: RNA
polymerase II transcription factor activity, binding, DNA
binding; INVOLVED IN: transcription initiation from RNA
polymerase II promoter, regulation of transcription,
DNA-dependent; EXPRESSED IN: 24 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: TATA-box binding (InterPro:IPR000814),
Beta2-adaptin/TATA-box binding, C-terminal
(InterPro:IPR012295), Transcription factor TFIID,
C-terminal/DNA glycosylase, N-terminal
(InterPro:IPR012294); BEST Arabidopsis thaliana protein
match is: TATA binding protein 2 (TAIR:AT1G55520.2); Has
35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991;
Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink)."
/db_xref="TAIR:AT3G13445"
/db_xref="Araport:AT3G13445"
intron_pos 26:2 (1/6)
intron_pos 56:0 (2/6)
intron_pos 80:0 (3/6)
intron_pos 97:0 (4/6)
intron_pos 112:0 (5/6)
intron_pos 143:0 (6/6)
BEGIN
1 MTDQGLEGSN PVDLSKHPSG IVPTLQNIVS TVNLDCKLDL KAIALQARNA EYNPKRFAAV
61 IMRIREPKTT ALIFASGKMV CTGAKSEDFS KMAARKYARI VQKLGFPAKF KDFKIQNIVG
121 SCDVKFPIRL EGLAYSHAAF SSYEPELFPG LIYRMKVPKI VLLIFVSGKI VITGAKVISH
181 FSLGFVIILV MSLSSL
//