LOCUS AEE75329.1 1340 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana varicose-like protein protein.
ACCESSION CP002686-2402
PROTEIN_ID AEE75329.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="VCR"
/locus_tag="AT3G13290"
/gene_synonym="varicose-related"
/inference="Similar to RNA sequence,
EST:INSD:EH829356.1,INSD:DR245039.1,INSD:DR277807.1,
INSD:ES023600.1,INSD:DR360616.1,INSD:DR383393.1,
INSD:EL081762.1,INSD:AV560496.1,INSD:AV530164.1,
INSD:ES034733.1,INSD:EL037500.1,INSD:ES022525.1,
INSD:AV548206.1,INSD:AV528422.1,INSD:N96712.1,
INSD:AV524315.1,INSD:EL084309.1,INSD:ES088828.1,
INSD:DR245037.1,INSD:DR378825.1,INSD:ES043390.1,
INSD:AV547781.1,INSD:AV546429.1,INSD:DR245038.1"
/note="varicose-related (VCR); FUNCTIONS IN: nucleotide
binding; LOCATED IN: cellular_component unknown; EXPRESSED
IN: male gametophyte, cultured cell, pollen tube;
EXPRESSED DURING: L mature pollen stage, M germinated
pollen stage; CONTAINS InterPro DOMAIN/s: WD40
repeat-like-containing domain (InterPro:IPR011046), WD40
repeat 2 (InterPro:IPR019782), WD40-repeat-containing
domain (InterPro:IPR017986), WD40 repeat
(InterPro:IPR001680), WD40/YVTN repeat-like-containing
domain (InterPro:IPR015943), WD40 repeat, subgroup
(InterPro:IPR019781); BEST Arabidopsis thaliana protein
match is: Transducin/WD40 repeat-like superfamily protein
(TAIR:AT3G13300.1); Has 1082 Blast hits to 861 proteins in
259 species: Archae - 6; Bacteria - 246; Metazoa - 313;
Fungi - 205; Plants - 136; Viruses - 0; Other Eukaryotes -
176 (source: NCBI BLink)."
/db_xref="TAIR:AT3G13290"
/db_xref="Araport:AT3G13290"
intron_pos 223:0 (1/11)
intron_pos 239:2 (2/11)
intron_pos 292:0 (3/11)
intron_pos 365:0 (4/11)
intron_pos 408:0 (5/11)
intron_pos 933:0 (6/11)
intron_pos 1053:0 (7/11)
intron_pos 1093:0 (8/11)
intron_pos 1150:0 (9/11)
intron_pos 1200:0 (10/11)
intron_pos 1242:0 (11/11)
BEGIN
1 MASSPGNTNP HNPPPFDLGT IFKPSSNPYP PPTGPFLNNQ YNQQLYAPPG IAAQPSPVNQ
61 TQQDVSSSSS ATNLQPQRTL SYPTPPLNPQ SPRVNHNPGT HILALLNNGG AVANQEPSHH
121 NEIARAFPGG SGPIHVPSGK MPKGRRLVGE HAVYDVDVRL QGEIQPQLEV TPITKYGSDP
181 QLVLGRQIAV NKVYICYGLK GGSIRVLNIN TALRSLFRGH SQRVTDMAFF AEDVHLLASV
241 SLDGKVFVWK ISEGSEGDEQ SQITGKIVVA LQILGEEDTK HPRVCWHCHK QEILVVSIGK
301 HVLRIDTTKV GRGEVFSAEA PLQCHLDKLI DGVQIVGKHD GEVTDLSMCQ WMTTRLVSSS
361 VDGTVKIWQD RKTQPLVVLR PHDGLPVNSA IFVTSPERPD HIILITGGPL NREIKIWVSA
421 GEEGWLLPAD TESWRCTQTL DLKSSTEPQA EKAFFNQVIA LSEAGLLLLA NARRNAIYSV
481 HLDYGSSPVE TLMDYLSEFT VTMPILSFIG TNDHPEEPFV KVYCVQTLAI QQYTLDLFLC
541 MPPPRENVGF EKSDSTVSRE ANLVESTLET SGMKPTELPS VGSVPKPSIL VNRSENANML
601 SFPAGPASAG ITPPAIVPPN GEPKTSGMPS ETSDVDSAYA PSPQLPLSPR LSSKLSGYHT
661 PVEAFEQVLP HHKLGGKTSS ADYFYVRQTD DVGGRNLDVS SVEENCRSKD TNVTPDDDVS
721 GIRSPSAFFK QPTHLVTPSE ILMGVSSTEA SITTEDKRDR DANIEEVNND ARGLEVELKE
781 VGEAQTSQNG EINYHETTEN HTSESRENIF CSQASNLSTE MARDRHPITE GSAIPGDSMA
841 YGQPLQAGDE RGLDSRDVSA KLPESGSSSG LVATNSKGKK QKAKNSQGPG LSSTSSNVAN
901 LADSFNEQSQ SLNHPMADLL PQLLALQETM TQVMASQKEM QRQLSNAVTG PIVKEGKKLE
961 VALGRMIEKS SKSNADALWA HFQEEAVKNE KALRDHGQQI MNETTNFTSK ELNAMFEKTM
1021 KKEFASVGPT LARVVTPVIE KTVSSAITES FQRGIGDKAV NQLEKSVNSK LETTVARQIQ
1081 AQFQTSGRQV LQEGLRSSME SSVIPSFERS CKTMFEQVDS TLQKGIGKHT SATQQRIDSG
1141 QSQLAHTLRE TISSASSVTQ ALNRELAESQ RNRLALTAAG SNPLVTQLSN GPLGALLEKV
1201 EAPMDPTTEL SRLISERKYE ESFTSALQRS DVSIVSWLCS QVDLRGLLAM NPLPLSQGVL
1261 LSLLQQLACD ISTDTSRKLG WMTDVVTAIN PSDQMIAVHA RPIFEQVYQI LHHHRNAPGS
1321 DVSAVRLIMH VINSLLMSCK
//