LOCUS AEE75179.1 1013 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana retinoblastoma-related 1 protein.
ACCESSION CP002686-2201
PROTEIN_ID AEE75179.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="RBR1"
/locus_tag="AT3G12280"
/gene_synonym="ATRBR1"
/gene_synonym="RB"
/gene_synonym="RB1"
/gene_synonym="RBR"
/gene_synonym="RETINOBLASTOMA 1"
/gene_synonym="RETINOBLASTOMA PROTEIN"
/gene_synonym="RETINOBLASTOMA-RELATED"
/gene_synonym="retinoblastoma-related 1"
/gene_synonym="RETINOBLASTOMA-RELATED PROTEIN 1"
/inference="Similar to RNA sequence,
EST:INSD:BP653848.1,INSD:ES199973.1,INSD:EH868122.1,
INSD:BP613989.1,INSD:ES034619.1,INSD:BP620249.1,
INSD:EG447616.1,INSD:EL143803.1,INSD:EL080960.1,
INSD:BP640622.1,INSD:AV528573.1,INSD:BP621834.1,
INSD:BP814652.1,INSD:BP804234.1,INSD:DR358266.1,
INSD:BP833417.1,INSD:EL101388.1,INSD:AV825256.1,
INSD:AV546444.1,INSD:BP643238.1,INSD:BP617021.1,
INSD:BP608206.1,INSD:EH869185.1,INSD:BP619412.1,
INSD:ES130198.1,INSD:CB258362.1,INSD:EL151686.1,
INSD:AV790766.1,INSD:BP810992.1,INSD:ES177628.1,
INSD:EH953334.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX824764.1,INSD:AY056293.1,INSD:AF245395.1,
INSD:AY150438.1"
/note="retinoblastoma-related 1 (RBR1); FUNCTIONS IN:
transcription factor binding; INVOLVED IN: in 15
processes; LOCATED IN: cytosol; EXPRESSED IN: 26 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Retinoblastoma-associated protein,
B-box (InterPro:IPR002719), Cyclin-like
(InterPro:IPR011028), Cyclin-related (InterPro:IPR013763),
Retinoblastoma-associated protein, A-box
(InterPro:IPR002720), Cyclin (InterPro:IPR006670); Has 676
Blast hits to 470 proteins in 118 species: Archae - 0;
Bacteria - 0; Metazoa - 486; Fungi - 0; Plants - 147;
Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink)."
/db_xref="TAIR:AT3G12280"
/db_xref="Araport:AT3G12280"
intron_pos 29:0 (1/16)
intron_pos 64:0 (2/16)
intron_pos 111:2 (3/16)
intron_pos 144:0 (4/16)
intron_pos 159:2 (5/16)
intron_pos 224:0 (6/16)
intron_pos 246:1 (7/16)
intron_pos 306:1 (8/16)
intron_pos 658:1 (9/16)
intron_pos 712:2 (10/16)
intron_pos 737:0 (11/16)
intron_pos 796:0 (12/16)
intron_pos 836:0 (13/16)
intron_pos 880:1 (14/16)
intron_pos 918:0 (15/16)
intron_pos 956:2 (16/16)
BEGIN
1 MEEVQPPVTP PIEPNGKRSE ASLLDICEKV LSLDGSTCDE ALKLFTETKR ILSASMSNIG
61 SGTREEVERF WFAFILYSVK RLSVRKEADG LSVSGDNEFN LCQILRALKL NIVDFFKELP
121 QFVVKAGSVL GELYGADWEN RLQAKEVQAN FVHLSLLSKY YKRGFREFFL TYDANAEKNS
181 ANSSTYLLDS YRFGWLLFLA LRNHAFSRFK DLVTCSNGVV SILAILIIHV PCRFRNFSIQ
241 DSSRFVKKGD KGVDLVASLC KIYDASEDEL RIVIDKANNL VETILKKKPS PASECQTDKL
301 DNIDPDGLTY FEDLLEETSI STSLITLEKD YYDGKGELDE RVFINEEDSL LGSGSLSAGA
361 VNITGVKRKI DALSSPARTF ISPLSPHKSP AAKTNGISGA TKLAATPVST AMTTAKWLRT
421 VISPLLPKPS PGLEHFLKSC DRDITNDVTR RAHIILEAIF PNSSLGAQCG GGSLQAVDLM
481 DDIWAEQRRL EACKLYYRVL EAMCKAEAQI LHANNLNSLL TNERFHRCML ACSAELVLAT
541 HKTITMLFPA VLERTGITAF DLSKVIESFI RHEDSLPREL RRHLNSLEER LLESMVWEKG
601 SSMYNSLIVA RPSLALEINQ LGLLAEPMPS LDAIAALINF SDGANHASSV QKHETCPGQN
661 GGIRSPKRLC TDYRSILVER NSFTSPVKDR LLALGNVKSK MLPPPLQSAF ASPTRPNPGG
721 GGETCAETGI NIFFTKINKL AAVRINGMVE RLQLSQQIRE SVYCFFQHVL AQRTSLLFSR
781 HIDQIILCCF YGVAKISQMS LTFREIIYNY RKQPQCKPLV FRSVYVDALQ CRRQGRIGPD
841 HVDIITFYNE IFIPAVKPLL VELGPVRNDR AVEANNKPEG QCPGSPKVSV FPSVPDMSPK
901 KVSAVHNVYV SPLRGSKMDA LISHSTKSYY ACVGESTHAY QSPSKDLSAI NNRLNNSSSN
961 RKRTLNFDAE AGMVSDSMVA NSLNLQNQNQ NQNGSDASSS GGAAPLKTEP TDS
//