LOCUS AEE74949.1 678 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana alpha-L-arabinofuranosidase 1 protein.
ACCESSION CP002686-1888
PROTEIN_ID AEE74949.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="ASD1"
/locus_tag="AT3G10740"
/gene_synonym="ALPHA-L-ARABINOFURANOSIDASE"
/gene_synonym="alpha-L-arabinofuranosidase 1"
/gene_synonym="ALPHA-L-ARABINOFURANOSIDASE 1"
/gene_synonym="ARABIDOPSIS THALIANA
ALPHA-L-ARABINOFURANOSIDASE 1"
/gene_synonym="ARAF"
/gene_synonym="ARAF1"
/gene_synonym="ATASD1"
/inference="Similar to RNA sequence,
EST:INSD:BE521313.1,INSD:BP612508.1,INSD:BE526042.1,
INSD:AV817205.1,INSD:BP804605.1,INSD:EL312049.1,
INSD:BP615773.1,INSD:BP593551.1,INSD:BP603090.1,
INSD:BP619003.1,INSD:AV827337.1,INSD:EL301529.1,
INSD:BP666911.1,INSD:BP621121.1,INSD:BP598627.1,
INSD:EH940091.1,INSD:DR259431.1,INSD:EL339985.1,
INSD:BP598865.1,INSD:BE526980.1,INSD:DR259428.1,
INSD:EL311473.1,INSD:DR259430.1,INSD:EH886693.1,
INSD:H37473.1,INSD:BP837657.1,INSD:BP830274.1,
INSD:DR259433.1,INSD:EL114477.1,INSD:BP597582.1,
INSD:EH888631.1,INSD:BP805706.1,INSD:EH961012.1,
INSD:BP600547.1,INSD:BP620261.1,INSD:BP817456.1,
INSD:BP812382.1,INSD:AA605341.1,INSD:BP593511.1,
INSD:EL230139.1,INSD:BP811400.2,INSD:AA721958.1,
INSD:BP641180.1,INSD:BP598407.1,INSD:BP807251.1,
INSD:DR259432.1,INSD:EH900130.1,INSD:EL046327.1,
INSD:DR259434.1,INSD:BP804518.1,INSD:AV800240.1,
INSD:AV797893.1,INSD:EH847188.1,INSD:EH974198.1,
INSD:BP600647.1,INSD:EL061481.1,INSD:BP795761.1,
INSD:Z48557.1,INSD:AV802459.1,INSD:AV811595.1,
INSD:BP605110.1,INSD:AV792081.1,INSD:BP603549.1,
INSD:EL008143.1,INSD:EL090406.1,INSD:BP615033.1,
INSD:EL224693.1,INSD:EL148073.1,INSD:BP853835.1,
INSD:BE530081.1,INSD:BP603288.1,INSD:BP601263.1,
INSD:BP805403.1,INSD:EL117540.1,INSD:BP637013.1,
INSD:EL099461.1,INSD:AV817334.1,INSD:BP606207.1,
INSD:BP808698.1,INSD:AV811358.1,INSD:BP590316.1,
INSD:DR259427.1,INSD:AV809236.1,INSD:EH839049.1,
INSD:EG487213.1,INSD:BP603033.1,INSD:AV801358.1,
INSD:EL120613.1,INSD:AV811195.1,INSD:BX836814.1,
INSD:BP607240.1,INSD:AV819657.1,INSD:BP598609.1,
INSD:AV816596.1,INSD:BP826735.1,INSD:EL291254.1,
INSD:H76239.1,INSD:BE521314.1,INSD:EG487214.1,
INSD:BP639204.1,INSD:EL080407.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY143944.1,INSD:AY243509.1,INSD:AF372949.1,
INSD:BX824011.1,INSD:AK220766.1,INSD:AK222175.1"
/note="alpha-L-arabinofuranosidase 1 (ASD1); FUNCTIONS IN:
hydrolase activity, acting on glycosyl bonds, xylan
1,4-beta-xylosidase activity, alpha-N-arabinofuranosidase
activity; INVOLVED IN: xylan catabolic process; LOCATED
IN: apoplast, vacuole, plant-type cell wall; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Alpha-L-arabinofuranosidase,
C-terminal (InterPro:IPR010720), Glycoside hydrolase,
catalytic core (InterPro:IPR017853), Galactose-binding
domain-like (InterPro:IPR008979); BEST Arabidopsis
thaliana protein match is: alpha-L-arabinofuranosidase 2
(TAIR:AT5G26120.1); Has 1627 Blast hits to 1611 proteins
in 407 species: Archae - 8; Bacteria - 1238; Metazoa - 0;
Fungi - 173; Plants - 169; Viruses - 0; Other Eukaryotes -
39 (source: NCBI BLink)."
/db_xref="TAIR:AT3G10740"
/db_xref="Araport:AT3G10740"
intron_pos 66:0 (1/16)
intron_pos 84:1 (2/16)
intron_pos 152:0 (3/16)
intron_pos 192:2 (4/16)
intron_pos 244:0 (5/16)
intron_pos 267:1 (6/16)
intron_pos 316:0 (7/16)
intron_pos 331:1 (8/16)
intron_pos 349:0 (9/16)
intron_pos 397:1 (10/16)
intron_pos 437:0 (11/16)
intron_pos 461:0 (12/16)
intron_pos 495:2 (13/16)
intron_pos 514:2 (14/16)
intron_pos 578:0 (15/16)
intron_pos 627:0 (16/16)
BEGIN
1 MDMESWKLLR SVCVLSFLLG SCFVYQSLRV VDAQEDPKPA VTLQVDASNG GGRPIPETLF
61 GIFFEEINHA GAGGLWAELV SNRGFEAGGQ NTPSNIWPWS IVGDHSSIYV ATDRSSCFER
121 NKIALRMDVL CDSKGCPSGG VGVYNPGYWG MNIEEGKKYK VALYVRSTGD IDLSVSLTSS
181 NGSRTLASEK IIASASDVSK WIKKEVLLEA KATDPSARLQ LTTTKKGSIW IDQVSAMPVD
241 THKGHGFRND LFQMMADIKP RFIRFPGGCF VEGEWLSNAF RWKETVGPWE ERPGHFGDVW
301 KYWTDDGLGH FEFFQMAEDI GAAPIWVFNN GISHNDEVET ASIMPFVQEA LDGIEFARGD
361 ANSTWGSVRA KMGRQEPFEL KYVAIGNEDC GKTYYRGNYI VFYDAIKKAY PDIKIISNCD
421 GSSHPLDHPA DYYDYHIYTS ASNLFSMYHQ FDRTSRKGPK AFVSEYAVTG KDAGTGSLLA
481 SLAEAAFLIG LEKNSDIVEM ASYAPLFVNT NDRRWNPDAI VFNSSHLYGT PSYWVQRFFA
541 ESSGATLLTS TLKGNSTSLV ASAISWKNNG KDYIRIKAVN FGANSENMQV LVTGLDPNVM
601 RVSGSKKTVL TSTNVMDENS FSQPEKVVPH ESLLELAEED MTVVLPPHSF SSFDLLKESA
661 KIRMPISDSS SHQKTTTV
//