LOCUS AEE74939.1 1309 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana nuclear pore complex protein protein.
ACCESSION CP002686-1872
PROTEIN_ID AEE74939.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="NUP1"
/locus_tag="AT3G10650"
/gene_synonym="AtNUP1"
/inference="Similar to RNA sequence,
EST:INSD:AV547180.1,INSD:AV523839.1,INSD:EG466749.1,
INSD:EL032996.1,INSD:AV547942.1,INSD:AV524049.1,
INSD:ES150677.1,INSD:ES017766.1,INSD:CB263881.1,
INSD:AV832303.1,INSD:EL229135.1,INSD:AV820711.1,
INSD:AV529694.1,INSD:AV542429.1,INSD:DR364027.1,
INSD:AV529860.1,INSD:ES186154.1,INSD:AV820483.1,
INSD:AV547311.1,INSD:EH977180.1,INSD:ES191205.1,
INSD:AV522408.1,INSD:DR383747.1,INSD:BX836724.1,
INSD:ES010842.1,INSD:ES065440.1,INSD:EH978800.1,
INSD:EH851508.1,INSD:ES185955.1,INSD:AV566105.1,
INSD:AV523927.1,INSD:AV816560.1,INSD:EL026294.1,
INSD:AV817119.1,INSD:AV543087.1,INSD:AV803842.1,
INSD:EL129440.1,INSD:ES097102.1,INSD:ES030880.1,
INSD:ES214532.1,INSD:ES095566.1,INSD:AV542433.1,
INSD:EG466750.1,INSD:ES139381.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY093026.1,INSD:BT010595.1"
/note="BEST Arabidopsis thaliana protein match is:
nucleoporin-related (TAIR:AT5G20200.1); Has 61042 Blast
hits to 31782 proteins in 2093 species: Archae - 202;
Bacteria - 16480; Metazoa - 16017; Fungi - 12552; Plants -
1653; Viruses - 629; Other Eukaryotes - 13509 (source:
NCBI BLink)."
/db_xref="TAIR:AT3G10650"
/db_xref="Araport:AT3G10650"
intron_pos 106:1 (1/8)
intron_pos 122:0 (2/8)
intron_pos 159:2 (3/8)
intron_pos 222:0 (4/8)
intron_pos 320:0 (5/8)
intron_pos 346:0 (6/8)
intron_pos 551:0 (7/8)
intron_pos 708:2 (8/8)
BEGIN
1 MASAARGESS NPYGGGLGTG GKFRKPTARR SQKTPYDRPT TSVRNAGLGG GDVRGGGWLS
61 KLVDPAQRLI TYSAQRLFGS LSRKRLGSGE TPLQSPEQQK QLPERGVNQE TKVGHKEDVS
121 NLSMKNGLIR MEDTNASVDP PKDGFTDLEK ILQGKTFTRS EVDRLTTLLR SKAADSSTMN
181 EEQRNEVGMV VRHPPSHERD RTHPDNGSMN TLVSTPPGSL RTLDECIASP AQLAKAYMGS
241 RPSEVTPSML GLRGQAGRED SVFLNRTPFP QKSPTMSLVT KPSGQRPLEN GFVTPRSRGR
301 SAVYSMARTP YSRPQSSVKI GSLFQASPSK WEESLPSGSR QGFQSGLKRR SSVLDNDIGS
361 VGPVRRIRQK SNLSSRSLAL PVSESPLSVR ANGGEKTTHT SKDSAEDIPG SSFNLVPTKS
421 SEMASKILQQ LDKLVSTREK SPSKLSPSML RGPALKSLQN VEAPKFLGNL PEKKANSPDS
481 SYQKQEISRE SVSREVLAQS EKTGDAVDGT SKTGSSKDQD MRGKGVYMPL TNSLEEHPPK
541 KRSFRMSAHE DFLELDDDLG AASTPCEVAE KQNAFEVEKS HISMPIGEKP LTPSEAMPST
601 SYISNGDASQ GTSNGSLETE RNKFVAFPIE AVQQSNMASE PTSKFIQGTE KSSISSGKPT
661 SEEKRIPLEE PKKPAAVFPN ISFSPPATGL LNQNSGASAD IKLEKTSSTA FGVSEAWAKP
721 TESKKTFSNS ASGAESSTSA APTLNGSIFS AGANAVTPPP SNGSLTSSPS FPPSISNIPS
781 DNSVGDMPST VQSFAATHNS SSIFGKLPTS NDSNSQSTSA SPLSSTSPFK FGQPAAPFSA
841 PAVSESSGQI SKETEVKNAT FGNTSTFKFG GMASADQSTG IVFGAKSAEN KSRPGFVFGS
901 SSVVGGSTLN PSTAAASAPE SSGSLIFGVT SSSTPGTETS KISASSAATN TGNSVFGTSS
961 FAFTSSGSSM VGGVSASTGS SVFGFNAVSS ASATSSQSQA SNLFGAGNAQ TGNTGSGTTT
1021 STQSIPFQFG SSPSAPSFGL SGNSSLASNS SPFGFSKSEP AVFTSVSTPQ LSSTNSSASS
1081 SSTMSSPLFG TSWQAPNSSP NSGPVFSSSF TTSSTPTTFS FGGSSAATVS STTTPIFGAS
1141 TNNTPSPSPI FGFGSTPPTT PQQPVFGNSG TPSQSLFGNS TPGFAFGAPN NGNGINNNQQ
1201 VSMEDSMAED TDQANRASMV APMFGQAAVS MPQPNFAFGG GAATQPPSMA NPFQFGGQPM
1261 ASTLQNASPF QASQSLEFQG GGSFSLGSTG GGDKSGRRIF KAKKSTRKK
//