LOCUS AEE74688.1 481 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana PYRIMIDINE 4 protein.
ACCESSION CP002686-1523
PROTEIN_ID AEE74688.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="PYD4"
/locus_tag="AT3G08860"
/gene_synonym="PYRIMIDINE 4"
/inference="Similar to RNA sequence,
EST:INSD:F13580.1,INSD:BE529298.1,INSD:BE526629.1,
INSD:BE520554.1,INSD:AV784626.1,INSD:BE529598.1,
INSD:BE528445.1,INSD:BE521781.1,INSD:EG527271.1,
INSD:AV797623.1,INSD:EG508640.1,INSD:AV823623.1,
INSD:BP592255.1,INSD:EG527272.1,INSD:BP591659.1,
INSD:BE521780.1,INSD:AV557269.1,INSD:AV811497.1,
INSD:CK119342.1,INSD:BE520553.1,INSD:F13719.1,
INSD:CB259575.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK226401.1,INSD:AY099816.1"
/note="PYRIMIDINE 4 (PYD4); FUNCTIONS IN: pyridoxal
phosphate binding, transaminase activity, catalytic
activity, alanine-glyoxylate transaminase activity;
INVOLVED IN: cellular response to nitrogen levels; LOCATED
IN: mitochondrion; EXPRESSED IN: 14 plant structures;
EXPRESSED DURING: LP.06 six leaves visible, LP.04 four
leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s:
Pyridoxal phosphate-dependent transferase, major domain
(InterPro:IPR015424), Aminotransferase class-III
(InterPro:IPR005814), Pyridoxal phosphate-dependent
transferase, major region, subdomain 1
(InterPro:IPR015421); BEST Arabidopsis thaliana protein
match is: alanine:glyoxylate aminotransferase 3
(TAIR:AT2G38400.1); Has 35951 Blast hits to 35930 proteins
in 2736 species: Archae - 736; Bacteria - 23081; Metazoa -
661; Fungi - 840; Plants - 399; Viruses - 17; Other
Eukaryotes - 10217 (source: NCBI BLink)."
/db_xref="TAIR:AT3G08860"
/db_xref="Araport:AT3G08860"
intron_pos 84:0 (1/8)
intron_pos 161:0 (2/8)
intron_pos 218:0 (3/8)
intron_pos 266:0 (4/8)
intron_pos 326:0 (5/8)
intron_pos 401:1 (6/8)
intron_pos 439:1 (7/8)
intron_pos 468:1 (8/8)
BEGIN
1 MRKLTAVNSL LKRNNYLLPR HGSSQTAAQR TSSVRETETE TKLPKMPPFN YSPPPYDGPS
61 TAEIIAKRRE FLSPALFHFY NTPLNIVEAK MQYVFDENGR RYLDAFGGIA TVSCGHCHPE
121 VVNSVVKQLK LINHSTILYL NHTISDFAEA LVSTLPGDLK VVFFTNSGTE ANELAMMMAR
181 LYTGCNDIVS LRNSYHGNAA ATMGATAQSN WKFNVVQSGV HHAINPDPYR GIFGSDGEKY
241 ASDVHDLIQF GTSGQVAGFI GESIQGVGGI VELAPGYLPA AYDIVRKAGG VCIADEVQSG
301 FARTGTHFWG FQSHGVIPDI VTMAKGIGNG IPLGAVVTTP EIAGVLSRRS YFNTFGGNPM
361 CTAAGHAVLR VLHEEKLQEN ANLVGSHLKR RLTLLKNKYE LIGDVRGRGL MLGVEFVKDR
421 DLKTPAKAET LHLMDQMKEM GVLVGKGGFY GNVFRITPPL CFTLSDADFL VDVMDHAMSK
481 M
//