LOCUS AEE74644.1 1703 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Clathrin, heavy chain protein.
ACCESSION CP002686-1458
PROTEIN_ID AEE74644.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G08530"
/gene_synonym="AtCHC2"
/gene_synonym="CHC2"
/gene_synonym="clathrin heavy chain 2"
/inference="Similar to RNA sequence,
EST:INSD:EL260674.1,INSD:BE530563.1,INSD:EL269149.1,
INSD:AV546236.1,INSD:AV567558.1,INSD:EH804687.1,
INSD:AV547990.1,INSD:EL257050.1,INSD:BP604211.1,
INSD:BP837733.1,INSD:EH922070.1,INSD:AV546206.1,
INSD:ES126030.1,INSD:ES108231.1,INSD:EL995772.1,
INSD:EH927962.1,INSD:ES150092.1,INSD:ES033107.1,
INSD:DR282619.1,INSD:EG472763.1,INSD:EL018210.1,
INSD:ES194597.1,INSD:EL118986.1,INSD:EL289258.1,
INSD:EL976518.1,INSD:EL969452.1,INSD:AV546868.1,
INSD:EH991088.1,INSD:AV441954.1,INSD:AV547752.1,
INSD:CK118151.1,INSD:ES185391.1,INSD:BE523658.1,
INSD:ES195464.1,INSD:AV559214.1,INSD:ES062624.1,
INSD:ES075255.1,INSD:CD531324.1,INSD:ES215497.1,
INSD:DR353920.1,INSD:EG478464.1,INSD:BP824930.2,
INSD:DR353133.1,INSD:AV546471.1,INSD:EL193439.1,
INSD:AV522712.1,INSD:AI100330.1,INSD:EL123127.1,
INSD:EG510883.1,INSD:ES029107.1,INSD:BE524015.1,
INSD:AV547996.1,INSD:EL008722.1,INSD:EL013354.1,
INSD:EG474329.1,INSD:AV523490.1,INSD:BE520613.1,
INSD:BP623012.1,INSD:EG478475.1,INSD:ES157901.1,
INSD:EH838960.1,INSD:EL973825.1,INSD:AI992969.1,
INSD:ES139166.1,INSD:AV523382.1,INSD:ES110171.1,
INSD:BE520614.1,INSD:AV827246.1,INSD:ES126363.1,
INSD:DR379172.1,INSD:EH899160.1,INSD:CF652606.1,
INSD:EG472764.1,INSD:AV529182.1,INSD:EL290134.1,
INSD:BP805827.2,INSD:BE526150.1,INSD:EL243784.1,
INSD:EG472766.1,INSD:EL132175.1,INSD:BE528943.1,
INSD:AV439989.1,INSD:BE524772.1,INSD:AV529308.1,
INSD:EH950568.1,INSD:CK119128.1,INSD:ES061954.1,
INSD:EG510882.1,INSD:BP649078.1,INSD:EL152487.1,
INSD:EH891000.1,INSD:BE530349.1,INSD:EL984707.1,
INSD:EG422270.1,INSD:ES059314.1,INSD:ES157491.1,
INSD:EL166592.1,INSD:EL025583.1,INSD:AV523402.1,
INSD:AV797642.1,INSD:BP828964.1,INSD:AV565689.1,
INSD:EG472762.1,INSD:AV539483.1,INSD:EL104698.1,
INSD:AV528221.1,INSD:AV546410.1,INSD:AV546122.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK221008.1,INSD:AK230290.1,INSD:AY094397.1,
INSD:BX825652.1,INSD:AY125528.1,INSD:BX842379.1,
INSD:AK222067.1"
/note="Clathrin, heavy chain; FUNCTIONS IN: structural
molecule activity, binding; INVOLVED IN: intracellular
protein transport, vesicle-mediated transport; LOCATED IN:
plasma membrane, chloroplast, membrane; EXPRESSED IN:
guard cell, leaf; EXPRESSED DURING: seedling growth;
CONTAINS InterPro DOMAIN/s: Clathrin, heavy chain
(InterPro:IPR016341), Clathrin, heavy chain,
linker/propeller domain (InterPro:IPR016025),
Tetratricopeptide-like helical (InterPro:IPR011990),
Clathrin, heavy chain, propeller, N-terminal
(InterPro:IPR001473), Clathrin, heavy chain, linker, core
motif (InterPro:IPR015348), Clathrin, heavy chain,
propeller repeat (InterPro:IPR022365), Armadillo-type fold
(InterPro:IPR016024), Clathrin, heavy chain/VPS, 7-fold
repeat (InterPro:IPR000547); BEST Arabidopsis thaliana
protein match is: Clathrin, heavy chain
(TAIR:AT3G11130.1); Has 1511 Blast hits to 1401 proteins
in 489 species: Archae - 2; Bacteria - 31; Metazoa - 879;
Fungi - 167; Plants - 128; Viruses - 0; Other Eukaryotes -
304 (source: NCBI BLink)."
/db_xref="TAIR:AT3G08530"
/db_xref="Araport:AT3G08530"
intron_pos 16:0 (1/29)
intron_pos 84:1 (2/29)
intron_pos 114:0 (3/29)
intron_pos 140:1 (4/29)
intron_pos 183:0 (5/29)
intron_pos 216:0 (6/29)
intron_pos 252:1 (7/29)
intron_pos 279:0 (8/29)
intron_pos 355:0 (9/29)
intron_pos 377:0 (10/29)
intron_pos 416:0 (11/29)
intron_pos 482:0 (12/29)
intron_pos 521:0 (13/29)
intron_pos 541:0 (14/29)
intron_pos 570:0 (15/29)
intron_pos 598:0 (16/29)
intron_pos 643:0 (17/29)
intron_pos 664:0 (18/29)
intron_pos 699:0 (19/29)
intron_pos 736:2 (20/29)
intron_pos 821:0 (21/29)
intron_pos 866:2 (22/29)
intron_pos 959:2 (23/29)
intron_pos 1294:0 (24/29)
intron_pos 1456:0 (25/29)
intron_pos 1513:0 (26/29)
intron_pos 1575:0 (27/29)
intron_pos 1616:0 (28/29)
intron_pos 1653:0 (29/29)
BEGIN
1 MAAANAPITM KEVLTLPSIG INQQFITFTN VTMESDKYIC VRETSPQNSV VIIDMNMPMQ
61 PLRRPITADS ALMNPNSKIL ALKAQVPGTT QDHLQIFNIE AKAKLKSHQM PEQVVFWKWI
121 TPKMLGLVTQ NSVYHWSIEG DSEPVKMFDR TANLANNQII NYKCSPNEKW LVLIGIAPGS
181 PERQQLVKGN MQLFSVDQQR SQALEAHAAS FAQFKVPGNE NPSILISFAS KSFNAGQITS
241 KLHVIELGAQ PGKPSFTKKQ ADLFFPPDFA DDFPVAMQVS HKFNLIYVIT KLGLLFVYDL
301 ETASAIYRNR ISPDPIFLTS EASSVGGFYA INRRGQVLLA TVNEATIIPF ISGQLNNLEL
361 AVNLAKRGNL PGAENLVVQR FQELFAQTKY KEAAELAAES PQGILRTPDT VAKFQSVPVQ
421 AGQTPPLLQY FGTLLTRGKL NSYESLELSR LVVNQNKKNL LENWLAEDKL ECSEELGDLV
481 KTVDNDLALK IYIKARATPK VVAAFAERRE FDKILIYSKQ VGYTPDYLFL LQTILRTDPQ
541 GAVNFALMMS QMEGGSPVDY NTITDLFLQR NLIREATSFL LDVLKPNLPE HAFLQTKVLE
601 INLVTFPNVA DAVLANGMFT HYDRPRIAQL CEKAGLYIQS LKHYSELPDI KRVIVNTHAI
661 EPQALVEFFG TLSSEWAMEC MKDLLLVNLR GNLQIIVQAC KEYCEQLGVD ACIKLFEQFK
721 SYEGLYFFLG SYLSMSEDPE IHFKYIEAAA KTGQIKEVER VTRESNFYDA EKTKNFLMEA
781 KLPDARPLIN VCDRFSFVPD LTHYLYTNNM LRYIEGYVQK VNPGNAPLVV GQLLDDECPE
841 DFIKGLILSV RSLLPVEPLV EECEKRNRLR LLTQFLEHLV SEGSQDVHVH NALGKIIIDS
901 NNNPEHFLTT NPYYDSKVVG KYCEKRDPTL AVVAYRRGQC DEELINVTNK NSLFKLQARY
961 VVERMDGDLW DKVLDENNDY RRQLIDQVVS TALPESKSPE QVSAAVKAFM TADLPHELIE
1021 LLEKIVLQNS AFSGNFNLQN LLILTAIKAD PSRVMDYINR LDNFDGPAVG EVAVEAQLYE
1081 EAFAIFKKFN LNVQAVNVLL DNVRSIERAV EFAFRVEEDS VWSQVAKAQL REGLVSDAIE
1141 SFIRADDATH FLEVIRVSED TDVYDDLVKY LLMVRQKVKE PKVDSELIYA YAKIDRLGEI
1201 EEFILMPNVA NLQHVGDRLY DEALYEAAKI IYAFISNWGK LAVTLVKLQQ FQGAVDAARK
1261 ANSAKTWKEV CFACVDAEEF RLAQICGLNI IIQVDDLEEV SEYYQNRGCF NELISLMESG
1321 LGLERAHMGI FTELGVLYAR YRYEKLMEHI KLFSTRLNIP KLIRACDEQQ HWQELTYLYI
1381 QYDEFDNAAT TVMNHSPEAW EHMQFKDIVA KVANVELYYK AVHFYLQEHP DIINDLLNVL
1441 ALRLDHTRVV DIMRKAGHLR LIKPYMIAVQ SNNVSAVNEA LNEIYVEEED YDRLRESIDL
1501 HDSFDQIGLA QKIEKHELVE MRRVAAYIYK KAGRWKQSIA LSKKDNMYKD CMETASQSGE
1561 HELAEQLLVY FIEQGKKECF ATCLFVCYDL IRPDVALELA WINNMMDFAF PYLLQFIREY
1621 SGKVDELIKD KLEAQKEVKA KEQEEKDVIS QQNMYAQMLP LALPAPPMPG MGGGGGYGPP
1681 PQMGGMPGMP PMPPYGMPPM GGY
//