LOCUS AEE74632.1 365 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DNA-directed RNA polymerase subunit
beta (Protein of unknown function, DUF642) protein.
ACCESSION CP002686-1444
PROTEIN_ID AEE74632.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G08030"
/inference="Similar to RNA sequence,
EST:INSD:DR196049.1,INSD:BP642592.1,INSD:BP836605.1,
INSD:AV442748.1,INSD:DR196014.1,INSD:DR196062.1,
INSD:DR196030.1,INSD:EH942167.1,INSD:DR196027.1,
INSD:EL312222.1,INSD:DR196035.1,INSD:DR196042.1,
INSD:DR196019.1,INSD:ES098195.1,INSD:DR196064.1,
INSD:BP848009.1,INSD:BP603820.1,INSD:ES020905.1,
INSD:EH889602.1,INSD:DR196031.1,INSD:EL048815.1,
INSD:ES060257.1,INSD:AV816081.1,INSD:EL323188.1,
INSD:BP806051.1,INSD:W43520.1,INSD:EL074539.1,
INSD:BP639188.1,INSD:ES119711.1,INSD:EL189031.1,
INSD:EH975631.1,INSD:BP655384.1,INSD:BP604330.1,
INSD:EL984720.1,INSD:BP792509.1,INSD:AV536049.1,
INSD:BP623909.1,INSD:DR196028.1,INSD:DR196022.1,
INSD:ES176477.1,INSD:DR196004.1,INSD:BP606778.1,
INSD:BP821070.1,INSD:CB253655.1,INSD:EL279563.1,
INSD:DR196026.1,INSD:DR196029.1,INSD:ES140969.1,
INSD:ES116899.1,INSD:BP573664.1,INSD:BP633019.1,
INSD:AV524562.1,INSD:AV808331.1,INSD:BP614472.1,
INSD:DR196072.1,INSD:EL264697.1,INSD:DR196054.1,
INSD:DR196057.1,INSD:DR196059.1,INSD:AV804208.1,
INSD:DR374223.1,INSD:BX837077.1,INSD:EH832320.1,
INSD:ES154753.1,INSD:AV789169.1,INSD:BP806763.1,
INSD:DR196013.1,INSD:ES076438.1,INSD:BP787614.1,
INSD:DR196063.1,INSD:BP578186.1,INSD:EL009464.1,
INSD:BP827157.1,INSD:DR196046.1,INSD:BP812626.1,
INSD:ES182689.1,INSD:BP816775.1,INSD:AV556384.1,
INSD:DR196060.1,INSD:DR196033.1,INSD:EL276610.1,
INSD:BP811589.1,INSD:AV783776.1,INSD:ES108019.1,
INSD:DR196073.1,INSD:BP638603.1,INSD:CK118637.1,
INSD:BP822219.1,INSD:BP827874.1,INSD:BP661040.1,
INSD:DR196065.1,INSD:BP607995.1,INSD:DR196037.1,
INSD:DR196050.1,INSD:DR196061.1,INSD:EH915435.1,
INSD:EH847382.1,INSD:BP830571.1,INSD:AV558418.1,
INSD:DR196074.1,INSD:DR196032.1,INSD:BP799956.1,
INSD:EG505118.1,INSD:BP832236.1,INSD:BP824270.1,
INSD:BP651943.1,INSD:BP841931.1,INSD:EL988022.1,
INSD:EL291592.1,INSD:BP786501.1,INSD:BP780652.1,
INSD:DR196010.1,INSD:DR303734.1,INSD:DR196040.1,
INSD:ES002418.1,INSD:N95905.1,INSD:DR196006.1,
INSD:EL043309.1,INSD:EL183857.1,INSD:BP601940.1,
INSD:EH901013.1,INSD:EH862800.1,INSD:BP813159.1,
INSD:DR196058.1,INSD:N96632.1,INSD:BP826188.1,
INSD:ES140526.1,INSD:DR196048.1,INSD:AV804791.1,
INSD:BP812365.1,INSD:AI099960.1,INSD:DR196041.1,
INSD:DR378188.1,INSD:EL294582.1,INSD:ES126658.1,
INSD:DR196039.1,INSD:ES177094.1,INSD:BP797671.1,
INSD:ES151145.1,INSD:DR196051.1,INSD:DR196020.1,
INSD:ES074609.1,INSD:AV538952.1,INSD:BP799416.1,
INSD:DR196068.1,INSD:ES043434.1,INSD:BP622552.1,
INSD:BP838280.1,INSD:DR196034.1,INSD:EH987763.1,
INSD:EL211265.1,INSD:AI997311.1,INSD:BP819460.1,
INSD:EH977327.1,INSD:BP645602.1,INSD:ES066079.1,
INSD:EL103470.1,INSD:BP805664.1,INSD:ES093997.1,
INSD:ES053405.1,INSD:EL247947.1,INSD:DR196003.1,
INSD:DR196005.1,INSD:ES192838.1,INSD:BP809324.1,
INSD:BP805475.1,INSD:ES085293.1,INSD:BP627657.1,
INSD:AV814614.1,INSD:BP836220.1,INSD:DR196067.1,
INSD:AV822908.1,INSD:ES099969.1,INSD:DR196052.1,
INSD:DR196011.1,INSD:DR196023.1,INSD:BP838999.1,
INSD:BP614909.1,INSD:BP650433.1,INSD:EH863600.1,
INSD:BP867429.1,INSD:BP647983.1,INSD:BP807483.1,
INSD:DR196071.1,INSD:BP606995.1,INSD:BP835261.1,
INSD:DR196008.1,INSD:EL174715.1,INSD:DR196070.1,
INSD:AV539454.1,INSD:AV791712.1,INSD:EH898774.1,
INSD:DR196018.1,INSD:EH824106.1,INSD:DR196015.1,
INSD:EL309232.1,INSD:BP830251.1,INSD:EL116384.1,
INSD:EL996168.1,INSD:EL180677.1,INSD:AV441520.1,
INSD:ES029917.1,INSD:ES130156.1,INSD:DR196025.1,
INSD:BP824357.1,INSD:DR196056.1,INSD:DR196043.1,
INSD:DR196007.1,INSD:DR196002.1,INSD:T75691.1,
INSD:ES189262.1,INSD:BP654549.1,INSD:EH908634.1,
INSD:BP812455.1,INSD:BP599788.1,INSD:DR196055.1,
INSD:EL306171.1,INSD:BP562345.2,INSD:ES056330.1,
INSD:EL234497.1,INSD:BP828757.1,INSD:DR196024.1,
INSD:BP810745.1,INSD:DR196017.1,INSD:DR196036.1,
INSD:DR196021.1,INSD:BP622023.1,INSD:DR196044.1,
INSD:ES045345.1,INSD:DR196009.1,INSD:EL193116.1,
INSD:AV803155.1,INSD:BP621884.1,INSD:EH978177.1,
INSD:BP648706.1,INSD:EL232918.1,INSD:BP574149.1,
INSD:DR196045.1,INSD:EH797297.1,INSD:BP618297.1,
INSD:DR377182.1,INSD:DR196001.1,INSD:DR196016.1,
INSD:EL197236.1,INSD:Z18132.1,INSD:DR196069.1,
INSD:BP597663.1,INSD:DR196066.1,INSD:ES061005.1,
INSD:EH862159.1,INSD:BP791009.1,INSD:AV521380.1,
INSD:DR196047.1,INSD:EH965211.1,INSD:BU635844.1,
INSD:AV816621.1,INSD:DR196053.1,INSD:Z18153.1,
INSD:EL241360.1,INSD:BP600444.1,INSD:DR196012.1,
INSD:BP835285.1,INSD:AV518023.1,INSD:CK119092.1,
INSD:BP815114.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK221027.1,INSD:BX824650.1,INSD:BT002544.1,
INSD:AY086764.1,INSD:BT000740.1,INSD:AY072318.1,
INSD:BX823931.1"
/note="Protein of unknown function, DUF642; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: cell wall;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF642 (InterPro:IPR006946); BEST
Arabidopsis thaliana protein match is: Protein of unknown
function, DUF642 (TAIR:AT2G41800.1); Has 380 Blast hits to
353 proteins in 21 species: Archae - 0; Bacteria - 6;
Metazoa - 0; Fungi - 0; Plants - 374; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink)."
/db_xref="TAIR:AT3G08030"
/db_xref="Araport:AT3G08030"
intron_pos 27:1 (1/2)
intron_pos 193:1 (2/2)
BEGIN
1 MAVPKAIILP ILLLICGAAL GAPASEGYLR NGNFEESPKK TDMKKTVLLG KNALPEWETT
61 GFVEYIAGGP QPGGMYFPVA HGVHAVRLGN EATISQKLEV KPGSLYALTF GASRTCAQDE
121 VLRVSVPSQS GDLPLQTLYN SFGGDVYAWA FVAKTSQVTV TFHNPGVQED PACGPLLDAV
181 AIKELVHPIY TRGNLVKNGG FEEGPHRLVN STQGVLLPPK QEDLTSPLPG WIIESLKAVK
241 FIDSKYFNVP FGHAAIELVA GKESAIAQVI RTSPGQTYTL SFVVGDAKND CHGSMMVEAF
301 AARDTLKVPH TSVGGGHVKT ASFKFKAVEA RTRITFFSGF YHTKKTDTVS LCGPVIDEIV
361 VSHVA
//