LOCUS AEE74614.1 240 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Immunoglobulin E-set superfamily
protein protein.
ACCESSION CP002686-1416
PROTEIN_ID AEE74614.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="SCN1"
/locus_tag="AT3G07880"
/gene_synonym="SUPERCENTIPEDE1"
/inference="Similar to RNA sequence,
EST:INSD:ES192634.1,INSD:ES185697.1,INSD:EL315856.1,
INSD:EH967774.1,INSD:EL314270.1,INSD:EH935769.1,
INSD:DR220397.1,INSD:EH809024.1,INSD:ES026917.1,
INSD:EH955691.1,INSD:EL190060.1,INSD:EL124296.1,
INSD:ES192989.1,INSD:EL223474.1,INSD:DR220399.1,
INSD:EL268959.1,INSD:ES125897.1,INSD:ES003807.1,
INSD:EL106584.1,INSD:AU239102.1,INSD:DR220400.1,
INSD:EG430310.1,INSD:ES019925.1,INSD:DR220424.1,
INSD:EH850853.1,INSD:BP829453.1,INSD:CB259512.1,
INSD:DR220392.1,INSD:EH958861.1,INSD:EL069392.1,
INSD:BE528960.1,INSD:ES207656.1,INSD:EG443809.1,
INSD:EG443821.1,INSD:DR220409.1,INSD:EL213992.1,
INSD:ES208825.1,INSD:DR220404.1,INSD:EL067537.1,
INSD:EL050403.1,INSD:EH798537.1,INSD:BP839757.1,
INSD:EL191987.1,INSD:ES198306.1,INSD:BP657395.1,
INSD:ES061754.1,INSD:BP834653.1,INSD:DR220421.1,
INSD:AU230376.1,INSD:DR220402.1,INSD:EH934458.1,
INSD:DR220415.1,INSD:DR220395.1,INSD:DR220391.1,
INSD:DR220417.1,INSD:EL313536.1,INSD:EL140947.1,
INSD:DR220418.1,INSD:EL224903.1,INSD:EL014319.1,
INSD:DR220414.1,INSD:ES054189.1,INSD:EL267952.1,
INSD:BP857944.1,INSD:EL207781.1,INSD:EL989013.1,
INSD:EL225387.1,INSD:DR220416.1,INSD:EH851989.1,
INSD:BP830065.1,INSD:EL985813.1,INSD:EL087876.1,
INSD:EL256303.1,INSD:ES174203.1,INSD:BP832565.1,
INSD:EL978548.1,INSD:H36683.1,INSD:DR220401.1,
INSD:ES213618.1,INSD:EL981774.1,INSD:DR220403.1,
INSD:EH805764.1,INSD:EH924867.1,INSD:ES162104.1,
INSD:EH973681.1,INSD:DR220408.1,INSD:DR220412.1,
INSD:DR220420.1,INSD:ES047048.1,INSD:DR372423.1,
INSD:EG443776.1,INSD:EL980971.1,INSD:DR220398.1,
INSD:DR220393.1,INSD:EG430015.1,INSD:BX837981.1,
INSD:EH933180.1,INSD:EL271557.1,INSD:ES161857.1,
INSD:DR220425.1,INSD:EL316202.1,INSD:ES131509.1,
INSD:EL182751.1,INSD:DR220423.1,INSD:DR220413.1,
INSD:DR220419.1,INSD:DR220411.1,INSD:EL183190.1,
INSD:EH818658.1,INSD:EL237166.1,INSD:EG443765.1,
INSD:EH909302.1,INSD:T43578.1,INSD:CB253078.1,
INSD:AV554196.1,INSD:EH980298.1,INSD:BX834819.1,
INSD:DR220407.1,INSD:DR358326.1,INSD:ES073380.1,
INSD:DR220410.1,INSD:DR220396.1,INSD:EH822209.1,
INSD:AI994998.1,INSD:EL167571.1,INSD:DR231351.1,
INSD:DR220406.1,INSD:EL103339.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX824505.1,INSD:BX822437.1,INSD:BX824653.1,
INSD:BX823777.1,INSD:AY085508.1,INSD:BT005578.1,
INSD:AF412276.1,INSD:AK118247.1"
/note="SUPERCENTIPEDE1 (SCN1); FUNCTIONS IN: Rho
GDP-dissociation inhibitor activity; INVOLVED IN: root
epidermal cell differentiation, cell tip growth; LOCATED
IN: cytoplasm; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro
DOMAIN/s: Immunoglobulin E-set (InterPro:IPR014756), RHO
protein GDP dissociation inhibitor (InterPro:IPR000406);
BEST Arabidopsis thaliana protein match is: Immunoglobulin
E-set superfamily protein (TAIR:AT1G62450.1); Has 660
Blast hits to 660 proteins in 181 species: Archae - 0;
Bacteria - 0; Metazoa - 325; Fungi - 162; Plants - 120;
Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink)."
/db_xref="TAIR:AT3G07880"
/db_xref="Araport:AT3G07880"
intron_pos 79:0 (1/4)
intron_pos 101:1 (2/4)
intron_pos 174:1 (3/4)
intron_pos 216:0 (4/4)
BEGIN
1 MSLVSGARDM GFDDNNNNKN NKDGDDENSS SRTRADDDAL SRQMSESSLC ATEEEEDDDS
61 KLQLGPQYTI KEHLEKDKDD ESLRKWKEQL LGSVDVTNIG ETLDPEVRID SLAIISPGRP
121 DIVLLVPENG NPKGMWFTLK EGSKYNLKFT FHVNNNIVSG LRYTNTVWKT GVKVDRAKEM
181 LGTFSPQLEP YNHVMPEETT PSGMFARGSY SARTKFLDDD NKCYLEINYS FDIRKEWPAL
//