LOCUS AEE74606.1 494 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002686-1407
PROTEIN_ID AEE74606.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G07810"
/inference="Similar to RNA sequence,
EST:INSD:ES144003.1,INSD:AV545074.1,INSD:ES120510.1,
INSD:EL043019.1,INSD:EH940492.1,INSD:EL169311.1,
INSD:EL276754.1,INSD:DR239622.1,INSD:BP786488.1,
INSD:BP585991.1,INSD:H76612.1,INSD:EG509418.1,
INSD:BP788084.1,INSD:EH909466.1,INSD:CA781973.1,
INSD:BP785830.1,INSD:AV815294.1,INSD:EH905216.1,
INSD:EH955619.1,INSD:EL134000.1,INSD:EL067068.1,
INSD:AV827973.1,INSD:BP812352.1,INSD:AV791047.1,
INSD:EH868376.1,INSD:EG509836.1,INSD:EL073738.1,
INSD:BP597750.1,INSD:BP796776.1,INSD:EH914353.1,
INSD:BP587917.1,INSD:ES037597.1,INSD:CB259929.1,
INSD:EH891569.1,INSD:EH856571.1,INSD:EG459011.1,
INSD:ES136882.1,INSD:EG509415.1,INSD:EL066112.1,
INSD:EL209500.1,INSD:BP831855.1,INSD:BP782389.1,
INSD:EG509841.1,INSD:EH990071.1,INSD:EL016184.1,
INSD:AV802816.1,INSD:EH970691.1,INSD:EL033334.1,
INSD:EH971525.1,INSD:EL992955.1,INSD:ES153096.1,
INSD:EH896582.1,INSD:AV800058.1,INSD:EG509414.1,
INSD:EH852426.1,INSD:EL205287.1,INSD:EL116795.1,
INSD:EL244808.1,INSD:EG488754.1,INSD:EH970142.1,
INSD:ES047138.1,INSD:BP838727.2,INSD:BP577882.1,
INSD:ES213239.1,INSD:ES099576.1,INSD:AV813998.1,
INSD:BP817987.1,INSD:DR239621.1,INSD:BP785236.1,
INSD:ES195558.1,INSD:EH878185.1,INSD:EG509419.1,
INSD:AA041015.1,INSD:ES186851.1,INSD:BP585849.1,
INSD:ES101498.1,INSD:AV825349.1,INSD:EH890198.1,
INSD:EL300832.1,INSD:EH799575.1,INSD:EL247396.1,
INSD:BP822693.1,INSD:BP586364.1,INSD:BP655663.1,
INSD:EL104038.1,INSD:AV805236.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY050782.1,INSD:AY150470.1,INSD:BX824430.1,
INSD:AF436830.1,INSD:AK229907.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA
recognition motif, RNP-1 (InterPro:IPR000504),
Nucleotide-binding, alpha-beta plait (InterPro:IPR012677);
BEST Arabidopsis thaliana protein match is: RNA-binding
(RRM/RBD/RNP motifs) family protein (TAIR:AT5G47620.2);
Has 54138 Blast hits to 30457 proteins in 1475 species:
Archae - 38; Bacteria - 13880; Metazoa - 18730; Fungi -
4978; Plants - 7803; Viruses - 149; Other Eukaryotes -
8560 (source: NCBI BLink)."
/db_xref="TAIR:AT3G07810"
/db_xref="Araport:AT3G07810"
intron_pos 75:0 (1/2)
intron_pos 491:1 (2/2)
BEGIN
1 MQSDNGKLFI GGISWDTNEE RLKEYFSSFG EVIEAVILKD RTTGRARGFG FVVFADPAVA
61 EIVITEKHNI DGRLVEAKKA VPRDDQNMVN RSNSSSIQGS PGGPGRTRKI FVGGLPSSVT
121 ESDFKTYFEQ FGTTTDVVVM YDHNTQRPRG FGFITYDSEE AVEKVLLKTF HELNGKMVEV
181 KRAVPKELSP GPSRSPLGAG YSYGVNRVNN LLNGYAQGFN PAAVGGYGLR MDGRFSPVGA
241 GRSGFANYSS GYGMNVNFDQ GLPTGFTGGT NYNGNVDYGR GMSPYYIGNT NRFGPAVGYE
301 GGNGGGNSSF FSSVTRNLWG NNGGLNYNNN NTNSNSNTYM GGSSSGNNTL SGPFGNSGVN
361 WGAPGGGNNA VSNENVKFGY GGNGESGFGL GTGGYAARNP GANKAAPSSS FSSASATNNT
421 GYDTAGLAEF YGNGAVYSDP TWRSPTPETE GPAPFSYGIG GGVPSSDVSA RSSSPGYVGS
481 YSVNKRQPNR GIAT
//