LOCUS AEE74575.1 1049 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Transcription factor jumonji (jmjC)
domain-containing protein protein.
ACCESSION CP002686-1355
PROTEIN_ID AEE74575.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /gene="IBM1"
/locus_tag="AT3G07610"
/gene_synonym="increase in bonsai methylation 1"
/note="increase in bonsai methylation 1 (IBM1); FUNCTIONS
IN: sequence-specific DNA binding transcription factor
activity, histone demethylase activity (H3-K9 specific);
INVOLVED IN: flower development, DNA methylation on
cytosine, leaf development, pollen development, histone
H3-K9 demethylation; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 16 plant structures; EXPRESSED
DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s:
Transcription factor jumonji/aspartyl beta-hydroxylase
(InterPro:IPR003347), Transcription factor jumonji
(InterPro:IPR013129); BEST Arabidopsis thaliana protein
match is: Transcription factor jumonji (jmjC)
domain-containing protein (TAIR:AT1G11950.1)."
/db_xref="TAIR:AT3G07610"
/db_xref="Araport:AT3G07610"
intron_pos 152:0 (1/16)
intron_pos 184:2 (2/16)
intron_pos 218:0 (3/16)
intron_pos 264:1 (4/16)
intron_pos 285:2 (5/16)
intron_pos 576:0 (6/16)
intron_pos 686:0 (7/16)
intron_pos 717:1 (8/16)
intron_pos 804:0 (9/16)
intron_pos 828:1 (10/16)
intron_pos 857:0 (11/16)
intron_pos 897:0 (12/16)
intron_pos 916:2 (13/16)
intron_pos 951:2 (14/16)
intron_pos 981:2 (15/16)
intron_pos 1010:2 (16/16)
BEGIN
1 MDSVEEEGVV RVEEENGRGG LRRHRRVSTK LANYVDPPTD DEEDGGPKRK GKRGGNRAPK
61 KTPKKDEEMQ KNEIDEANRV TGLVKEKRAA TKILNRKDSI IEVGEASGSM PKEVKGIRIG
121 KRKGEIDGEI PTKPGKKPKT TVDPRIIGYR PDNMCHQCQK SDRIVERCQT CNSKRYCHPC
181 LDTWYPLIAK EDVAKKCMFC SSTCNCRACL RLDTKLKGIN SNLIVSEEEK VQASKFILQS
241 LLPHLKGIND EQVAEKEVEA KIYGLKFEEV RPQDAKAFPD ERLYCDICKT SIYDLHRNCK
301 SCSFDICLSC CLEIRNGKAL ACKEDVSWNY INRGLEYEHG QEGKVIEKPA NKLDDKLKDK
361 LDGKPDDKPK GKPKGRPKGK PDDKPKGKLK GKQDDKPDDK PDEKPVNTDH MKYPSLWKAN
421 EAGIITCCCG AGELVLKRLL PDGWISELVN RVEKTAEAGE LLNLPETVLE RCPCSNSDRH
481 IDIDSCNLLK AACREGSEDN YLYSPSVWDV QQDDLKHFQH HWVKGEPVIV RNVLEATSGL
541 SWEPMVMHRA CRQISHVQHG SLKDVVAVDC LDFCEVKVNL HEFFTGYTDG RYDRMGWPLV
601 LKLKDWPPAK VFKDNLPRHA EEFLCSLPLK HYTHPVNGPL NLAVKLPQNC LKPDMGPKTY
661 VASGFAQELG RGDSVTKLHC DMSDADLWTK LYPFNVSPSI AFLVLHRPGI RFLVLLMPNM
721 QPGIGNLKKK HAEQDLKELY SSVANKEEMM EILENSRQQV QNVETDDGAL WDIFRREDIP
781 KLESYIEKHH KEFRHLYCCP VSQVVHPIHD QNFYLTRYHI MKLKEEYGIE PWTFNQKLGD
841 AVLIPVGCPH QVRNLKSCNK VALDFVSPEN VSECLRLTKQ YRLLPPNHFA KEDKLGVKKM
901 IVHAVDKALR DLSGEKSPEP EEKKQNMRGP KKGAAKAVAK ALKDLSPSEK KSSEAAEEEI
961 SNGIVNAIDK GLKDLPPSEE KSSEAKVEIS NGIVSAMDKD LEHISSSEKK STEEEGVKRP
1021 NIVRTYERRK KLGSEVTNAY IDRLEMEKM
//