LOCUS AEE74454.1 377 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pectin lyase-like superfamily protein protein.
ACCESSION CP002686-1193
PROTEIN_ID AEE74454.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G06770"
/inference="Similar to RNA sequence,
EST:INSD:AA605390.1,INSD:DR364261.1,INSD:DR364260.1,
INSD:EH809492.1,INSD:ES092160.1,INSD:BP822058.1,
INSD:EL149800.1,INSD:AA067430.1,INSD:EH989028.1,
INSD:DR198347.1,INSD:EH841729.1,INSD:EH991208.1,
INSD:EL048140.1,INSD:DR376251.1,INSD:BP665778.1,
INSD:BG459282.1,INSD:BX836055.1,INSD:R89946.1,
INSD:ES076864.1,INSD:EL148976.1,INSD:AV820717.1,
INSD:EH812215.1,INSD:EH800112.1,INSD:BP563980.1,
INSD:EL086028.1,INSD:EL170220.1,INSD:AI100499.1,
INSD:BP801344.1,INSD:EL076617.1,INSD:BP576264.1,
INSD:AV439803.1"
/inference="Similar to RNA sequence, mRNA:INSD:AY128935.1"
/note="Pectin lyase-like superfamily protein; FUNCTIONS
IN: polygalacturonase activity; INVOLVED IN: response to
cyclopentenone, carbohydrate metabolic process; EXPRESSED
IN: 24 plant structures; EXPRESSED DURING: 15 growth
stages; CONTAINS InterPro DOMAIN/s: Pectin lyase
fold/virulence factor (InterPro:IPR011050), Glycoside
hydrolase, family 28 (InterPro:IPR000743), Pectin lyase
fold (InterPro:IPR012334), Parallel beta-helix repeat
(InterPro:IPR006626); BEST Arabidopsis thaliana protein
match is: Pectin lyase-like superfamily protein
(TAIR:AT5G49215.1); Has 3178 Blast hits to 3170 proteins
in 427 species: Archae - 6; Bacteria - 1287; Metazoa - 7;
Fungi - 621; Plants - 1165; Viruses - 0; Other Eukaryotes
- 92 (source: NCBI BLink)."
/db_xref="TAIR:AT3G06770"
/db_xref="Araport:AT3G06770"
intron_pos 44:0 (1/4)
intron_pos 84:1 (2/4)
intron_pos 142:2 (3/4)
intron_pos 166:1 (4/4)
BEGIN
1 MSFADKGGAQ LYVPPGHWLT GSFSLTSHLT LFLENGAVIV ASQDPSHWEV VDPLPSYGRG
61 IDLPGKRYKS LINGNKLHDV VVTGDNGTID GQGLVWWDRF TSHSLKYNRP HLIEFLSSEN
121 VIVSNLTFLN APAYSIYSIY SSHVYIHKIL AHSSPKSPYT IGIVPDSSDY VCIQNSTINV
181 GYDAISLKSG WDEYGIAYSR PTENVHIRNV YLRGASGSSI SFGSEMSGGI SDVVVDNAHI
241 HYSLTGIAFR TTKGRGGYIK EIDISNIDML RIGTAIVANG SFGSHPDDKY DVNALPLVSH
301 IRLSNISGEN IGIAGKLFGI KESPFSSVTL SNVSLSMSSG SSVSWQCSYV YGSSESVIPE
361 PCPELKRDAD AYGRAAV
//