LOCUS AEE74356.1 409 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Serinc-domain containing serine and
sphingolipid biosynthesis protein protein.
ACCESSION CP002686-1053
PROTEIN_ID AEE74356.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G06170"
/gene_synonym="F28L1.11"
/gene_synonym="F28L1_11"
/inference="Similar to RNA sequence,
EST:INSD:EL305264.1,INSD:ES209080.1,INSD:AV797786.1,
INSD:DR289402.1,INSD:BP840120.1,INSD:BE037777.1,
INSD:ES090529.1,INSD:BP584981.1,INSD:DR289400.1,
INSD:AV440372.1,INSD:BP802422.1,INSD:EL239269.1,
INSD:EH933156.1,INSD:DR370658.1,INSD:BP575383.1,
INSD:BP654010.1,INSD:ES092942.1,INSD:BP581915.1,
INSD:ES159309.1,INSD:DR289401.1,INSD:CF773360.1,
INSD:EL029860.1,INSD:EL337090.1,INSD:BP603087.1,
INSD:EH886219.1,INSD:BP788059.1,INSD:EH899036.1,
INSD:AV819049.1,INSD:DR285777.1,INSD:ES147658.1,
INSD:DR289397.1,INSD:BP799452.1,INSD:EH971735.1,
INSD:ES035765.1,INSD:AV805709.1,INSD:ES189198.1,
INSD:DR289396.1,INSD:BP859538.1,INSD:ES069828.1,
INSD:EL972521.1,INSD:EL011553.1,INSD:BP597695.1,
INSD:DR379613.1,INSD:DR289395.1,INSD:DR289393.1,
INSD:AV819770.1,INSD:DR381640.1,INSD:EL101392.1,
INSD:DR289398.1,INSD:BP647052.1,INSD:EL067521.1,
INSD:AV805678.1,INSD:EH871735.1,INSD:BP865821.1,
INSD:ES035527.1,INSD:BP616080.1,INSD:EL054939.1,
INSD:EH968483.1,INSD:ES009874.1,INSD:EL329099.1,
INSD:ES216333.1,INSD:BP570018.1,INSD:BP580333.1,
INSD:EL167312.1,INSD:BP580768.1,INSD:BP580084.1,
INSD:EL201316.1,INSD:ES164132.1,INSD:DR289394.1,
INSD:ES209989.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BX822748.1,INSD:BX824468.1,INSD:BT023726.1,
INSD:BX823721.1"
/note="Serinc-domain containing serine and sphingolipid
biosynthesis protein; LOCATED IN: endomembrane system,
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TMS
membrane protein/tumour differentially expressed protein
(InterPro:IPR005016); BEST Arabidopsis thaliana protein
match is: Serinc-domain containing serine and sphingolipid
biosynthesis protein (TAIR:AT1G16180.2); Has 780 Blast
hits to 771 proteins in 184 species: Archae - 0; Bacteria
- 2; Metazoa - 443; Fungi - 127; Plants - 140; Viruses -
0; Other Eukaryotes - 68 (source: NCBI BLink)."
/db_xref="TAIR:AT3G06170"
/db_xref="Araport:AT3G06170"
intron_pos 60:1 (1/4)
intron_pos 139:1 (2/4)
intron_pos 176:2 (3/4)
intron_pos 314:1 (4/4)
BEGIN
1 MACCLASCCA SATCGLCSSV ASGISRKSAR IAYCGLFGAS LVVSWILRET GAPLLEKLPW
61 INTSDSYTKE WYQQQAVLRV SFGNFLFFAI YALIMIGVKD QNDRRDSWHH GGWGLKMIVW
121 FLLVVLMFFV PNVIVSLYGT LSKFGAGAFL LVQVVLLLDA THNWNDSWVE KDEKKWYIAL
181 LVISIVCYIA TYTFSGILFI WFNPSGQDCG LNVFFIVMPM ILAFVFAIIA LHPAVNGSLL
241 PASVISVYCA YVCYTGLSSE PHDYVCNGLN KSKAVNASTL ILGMLTTVLS VLYSALRAGS
301 STTFLSPPSS PRSGVKDALL GDPEDGKKSG EAEARPVSYS YSFFHIIFAL ASMYAAMLLS
361 GWTDSSESAT LIDVGWTSVW VKICTGWVTA GLYIWTLIAP LILPDREFY
//