LOCUS AEE74256.1 425 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RING/U-box superfamily protein protein.
ACCESSION CP002686-911
PROTEIN_ID AEE74256.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G05545"
/inference="Similar to RNA sequence,
EST:INSD:ES138997.1,INSD:EL199442.1,INSD:EL155061.1,
INSD:EH799257.1,INSD:EL271325.1,INSD:BP828390.1,
INSD:EL093221.1,INSD:EH802860.1,INSD:EH837879.1,
INSD:EH955831.1,INSD:DR243892.1,INSD:ES192064.1,
INSD:EG463599.1,INSD:ES040659.1,INSD:AV813323.1,
INSD:EL044283.1,INSD:EL286813.1,INSD:EG506403.1,
INSD:EH834406.1,INSD:EH931620.1,INSD:DR243890.1,
INSD:EL243179.1,INSD:EL978949.1,INSD:ES001077.1,
INSD:EL008155.1,INSD:EL087464.1,INSD:EG489914.1,
INSD:EL322003.1,INSD:EL070185.1,INSD:DR243888.1,
INSD:DR243889.1,INSD:EL225564.1,INSD:AV530604.1,
INSD:AV440491.1,INSD:BP817292.1,INSD:AV544013.1,
INSD:BX835141.1,INSD:AV810966.1,INSD:AV539951.1,
INSD:EL996341.1,INSD:EL245544.1,INSD:BP833477.1,
INSD:BP859092.1,INSD:BP835259.1,INSD:EL990047.1,
INSD:EH912980.1,INSD:ES101143.1,INSD:BP585273.1,
INSD:AV531539.1,INSD:ES153265.1,INSD:EL980928.1,
INSD:AV798769.1,INSD:DR243891.1,INSD:EH982148.1,
INSD:EL287424.1,INSD:EG506405.1,INSD:ES200392.1,
INSD:ES166822.1,INSD:AV519718.1,INSD:ES152314.1,
INSD:BX838551.1,INSD:EG528171.1,INSD:ES005491.1,
INSD:EL087719.1,INSD:BP817203.1,INSD:AV552482.1,
INSD:BP807424.1,INSD:EL282251.1,INSD:EL033946.1,
INSD:EH969029.1,INSD:EG528172.1,INSD:EH894059.1,
INSD:EL258949.1,INSD:BP608929.1,INSD:DR243886.1,
INSD:DR243887.1,INSD:EG489913.1,INSD:ES051500.1,
INSD:EL263071.1,INSD:EL969680.1,INSD:EH851926.1,
INSD:AV806081.1,INSD:ES161576.1,INSD:AV802282.1,
INSD:EG506401.1,INSD:ES190441.1,INSD:EL982079.1,
INSD:EH950564.1,INSD:EH818400.1,INSD:AV811048.1,
INSD:AV553709.1,INSD:ES186404.1,INSD:EL238143.1,
INSD:EL261892.1,INSD:EL101712.1,INSD:ES173902.1,
INSD:EG506399.1,INSD:EL977028.1,INSD:ES004570.1,
INSD:EH929419.1"
/inference="Similar to RNA sequence,
mRNA:INSD:BT001921.1,INSD:DQ059111.1"
/note="RING/U-box superfamily protein; CONTAINS InterPro
DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841),
Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc
finger, PHD-type (InterPro:IPR001965); BEST Arabidopsis
thaliana protein match is: RING/U-box superfamily protein
(TAIR:AT2G47700.1); Has 1560 Blast hits to 1269 proteins
in 195 species: Archae - 0; Bacteria - 91; Metazoa - 627;
Fungi - 277; Plants - 288; Viruses - 4; Other Eukaryotes -
273 (source: NCBI BLink)."
/db_xref="TAIR:AT3G05545"
/db_xref="Araport:AT3G05545"
intron_pos 64:1 (1/5)
intron_pos 122:0 (2/5)
intron_pos 140:2 (3/5)
intron_pos 149:1 (4/5)
intron_pos 287:2 (5/5)
BEGIN
1 MGLGNKGNKF NFGDNDLADE ASGADGDEGD GFGSVACSIC LETVVKNGDR AWANLQCDHQ
61 FHLDCIGSAF NAKGVMQCPN CRKVEKGQWL YANGCRSYPE FNVEDWVHEE DIYDIGAYSE
121 MSFGVHWCPF GSSARLPSFE DGEFSPSSYH DLLGQQGYYT EPAAPTAGHP CPYVTYFGPV
181 HSPSSSSGGA AGVSDSSSFS SHWNTGSSVS GEVPTPYGFP VDPHYHGWDY HPPPPPPPQH
241 FSASGAHVGS PTQPTPPPAA ARTSRANGSD MIRPRPPHFT RPFHGHSSSG RAGSSVASVP
301 RTPPFPGSNA RTRDRMQALQ AYYQQSSAQS HQPDSPIVSR GPVFPSGRRP ARGIASGMGS
361 TSSSSDQAGG SGFIRFNIWE RDPYMQSQQA YSVNQMDREP NIWTSSFNEG SGSFHQRHGG
421 GGGSS
//