LOCUS AEE74249.1 246 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Rubber elongation factor protein
(REF) protein.
ACCESSION CP002686-902
PROTEIN_ID AEE74249.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G05500"
/gene_synonym="F22F7.5"
/gene_synonym="F22F7_5"
/inference="Similar to RNA sequence,
EST:INSD:DR232174.1,INSD:EL042245.1,INSD:BP573716.1,
INSD:DR232172.1,INSD:AV521297.1,INSD:DR298919.1,
INSD:BP633750.1,INSD:ES103837.1,INSD:DR232186.1,
INSD:EL040891.1,INSD:DR232816.1,INSD:ES042677.1,
INSD:EL213206.1,INSD:DR232185.1,INSD:AV539554.1,
INSD:BP621981.1,INSD:DR232183.1,INSD:BP864285.1,
INSD:EL968284.1,INSD:CD532467.1,INSD:DR232169.1,
INSD:EL971213.1,INSD:EL105355.1,INSD:EG509602.1,
INSD:AV811438.1,INSD:AV544503.1,INSD:DR379306.1,
INSD:DR232161.1,INSD:DR232167.1,INSD:EL175153.1,
INSD:BP629979.1,INSD:EH914372.1,INSD:AV528058.1,
INSD:EL006164.1,INSD:T21243.1,INSD:DR232817.1,
INSD:EL034413.1,INSD:DR232166.1,INSD:DR232179.1,
INSD:AA394974.1,INSD:DR232177.1,INSD:CB185754.2,
INSD:DR246188.1,INSD:DR232180.1,INSD:EH945445.1,
INSD:DR232181.1,INSD:EL275565.1,INSD:EL106403.1,
INSD:EG509603.1,INSD:DR232176.1,INSD:EH883173.1,
INSD:ES177242.1,INSD:DR232163.1,INSD:EL125455.1,
INSD:EH901321.1,INSD:DR232170.1,INSD:EL055287.1,
INSD:EH826068.1,INSD:EL122870.1,INSD:AV804970.1,
INSD:AA720137.1,INSD:AV817986.1,INSD:DR298920.1,
INSD:EL985722.1,INSD:DR232818.1,INSD:DR232819.1,
INSD:AV787308.1,INSD:DR232165.1,INSD:DR232171.1,
INSD:DR232178.1,INSD:BP860374.1,INSD:ES014041.1,
INSD:DR232168.1,INSD:BP791693.1,INSD:EH890459.1,
INSD:AV829211.1,INSD:BE522842.1,INSD:DR232182.1,
INSD:DR232184.1,INSD:DR232164.1,INSD:BP625393.1,
INSD:DR232175.1,INSD:EH899162.1,INSD:EL008164.1,
INSD:DR232173.1,INSD:ES092485.1,INSD:DR232162.1,
INSD:BP652675.1,INSD:ES141447.1,INSD:ES166796.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY063733.1,INSD:AY085141.1,INSD:AY052683.1"
/note="Rubber elongation factor protein (REF); INVOLVED
IN: biological_process unknown; LOCATED IN: vacuole;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Rubber
elongation factor (InterPro:IPR008802); BEST Arabidopsis
thaliana protein match is: Rubber elongation factor
protein (REF) (TAIR:AT2G47780.1); Has 129 Blast hits to
129 proteins in 22 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 129; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink)."
/db_xref="TAIR:AT3G05500"
/db_xref="Araport:AT3G05500"
intron_pos 15:0 (1/2)
intron_pos 90:0 (2/2)
BEGIN
1 MATQTDLAQP KLDMTKEEKE RLKYLQFVQA AAVEALLRFA LIYAKAKDKS GPLKPGVESV
61 EGAVKTVVGP VYEKYHDVPV EVLKYMDQKV DMSVTELDRR VPPVVKQVSA QAISAAQIAP
121 IVARALASEV RRAGVVETAS GMAKSVYSKY EPAAKELYAN YEPKAEQCAV SAWKKLNQLP
181 LFPRLAQVAV PTAAFCSEKY NDTVVKAAEK GYRVTSYMPL VPTERISKIF AEEKAETEPL
241 EFHPLD
//