LOCUS AEE74140.1 715 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pseudouridine synthase family protein protein.
ACCESSION CP002686-755
PROTEIN_ID AEE74140.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G04820"
/gene_synonym="T9J14.23"
/gene_synonym="T9J14_23"
/inference="Similar to RNA sequence,
EST:INSD:BP584337.1,INSD:EG479175.1,INSD:DR383703.1,
INSD:EG515058.1,INSD:AV783184.1,INSD:EH846049.1,
INSD:EG500496.1,INSD:EG500506.1,INSD:BP565765.1,
INSD:ES056047.1,INSD:BP663631.1,INSD:EL160279.1,
INSD:EG500498.1,INSD:EG515059.1,INSD:EL178773.1,
INSD:EG500509.1,INSD:EG463822.1,INSD:BP581990.1,
INSD:EG500512.1,INSD:EH840326.1,INSD:BP572028.1,
INSD:AA651441.1,INSD:EL196988.1,INSD:AV820016.1,
INSD:EG505542.1,INSD:EG500494.1"
/note="Pseudouridine synthase family protein; FUNCTIONS
IN: pseudouridine synthase activity; INVOLVED IN:
pseudouridine synthesis, RNA modification; EXPRESSED IN:
21 plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Pseudouridine synthase,
catalytic domain (InterPro:IPR020103), Pseudouridine
synthase, TruD (InterPro:IPR001656), Pseudouridine
synthase TruD, eukaryotic (InterPro:IPR017091),
Pseudouridine synthase, TruD, insertion domain
(InterPro:IPR011760); Has 2276 Blast hits to 2198 proteins
in 933 species: Archae - 260; Bacteria - 1262; Metazoa -
203; Fungi - 153; Plants - 61; Viruses - 0; Other
Eukaryotes - 337 (source: NCBI BLink)."
/db_xref="TAIR:AT3G04820"
/db_xref="Araport:AT3G04820"
intron_pos 64:2 (1/19)
intron_pos 92:0 (2/19)
intron_pos 159:0 (3/19)
intron_pos 230:2 (4/19)
intron_pos 255:0 (5/19)
intron_pos 274:0 (6/19)
intron_pos 300:2 (7/19)
intron_pos 321:2 (8/19)
intron_pos 351:0 (9/19)
intron_pos 385:1 (10/19)
intron_pos 420:0 (11/19)
intron_pos 444:2 (12/19)
intron_pos 466:1 (13/19)
intron_pos 525:0 (14/19)
intron_pos 547:2 (15/19)
intron_pos 568:0 (16/19)
intron_pos 580:2 (17/19)
intron_pos 603:2 (18/19)
intron_pos 708:0 (19/19)
BEGIN
1 MKLSRTVLSC LPSLLKPYSS LSWTTKIATI ATNFEGMKTV DEADVGISCF ISQLPGFRGI
61 LKQRYADFIV NEVDMDGNVV HLTSLDLPPE MAVKEEDKAK SCDNVPQNYT SAVESFKSIS
121 SVTDAERLEI LINQVTSGTD GEVLPVVLDP SSDKSKRTAI HNFVKENFKF LVTDTVDGPD
181 STSKCIRVRV NSGANNNRGN RSKKRKERGD KPFDSRGSEH WPEHVGKFLR FHLYKENKDT
241 QEALGLIGKM LGVQPKSFGF SGTKDKRSVS TQRVTVFKQQ ASKLAALNKR LFGIKVGDFC
301 NVKEGLLLGQ LMGNRFTITL RGVVADSEET IKQSAESLGK DGFINYFGLQ RFGSGSVPTH
361 HVGAALLKGE WKDAVDMILD PRETERHVVN DAREYYKETG DIDGTLRQLP RYLVAERAIL
421 QCLKKCPGNY LQALKGIPRT LRMMYVHSYQ SYLWNNAASL RVKNYGTSQV VLGDLVSTKV
481 DAAKRMVDSL TSEHNESSEE ALDCDQVDDT AVVDLPAERS DLVKVVSIED LEAGTYSTSD
541 IVLPLPGSRV IYPSNDIAEI YHDLAKKDGI SLTESIHGVK EFSITSMTGG YRRVFQKPID
601 FEWELLTYTD SNKPLAETDL DRIPMNKPVE KVGSTEEIED ESMKSDTNPH DSGETNLKDQ
661 TDSNEAEKDT GNPDSEQTQM ALKMALTLPS SCYATMAIRE LLKTSTSVAY HKTLN
//