LOCUS AEE74089.1 245 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002686-697
PROTEIN_ID AEE74089.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 23459830)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 23459830)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 23459830)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
protein /locus_tag="AT3G04500"
/gene_synonym="T27C4.15"
/gene_synonym="T27C4_15"
/inference="Similar to RNA sequence,
EST:INSD:AI993250.1,INSD:DR384184.1,INSD:EH902156.1,
INSD:BP831565.1,INSD:EL020303.1,INSD:ES026251.1,
INSD:BP828998.1,INSD:ES086832.1,INSD:DR262710.1,
INSD:BP630481.1,INSD:EL152746.1,INSD:DR305036.1,
INSD:DR262707.1,INSD:EH818177.1,INSD:EG473282.1,
INSD:ES206885.1,INSD:ES053956.1,INSD:DR262712.1,
INSD:ES126254.1,INSD:DR262711.1,INSD:EL182713.1,
INSD:EL105486.1,INSD:BP826148.1,INSD:ES030584.1,
INSD:DR262708.1,INSD:DR262709.1,INSD:EG473283.1,
INSD:T46430.1,INSD:AA404855.1,INSD:BP834473.1,
INSD:EL030969.1,INSD:ES007811.1,INSD:BP627943.1,
INSD:AU239175.1,INSD:EL157545.1,INSD:DR305037.1,
INSD:EH814141.1,INSD:DR371164.1,INSD:ES041091.1,
INSD:DR262705.1,INSD:DR262704.1,INSD:BP636609.1,
INSD:CK118446.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AK118315.1,INSD:BT005571.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: biological_process unknown;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition
motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding,
alpha-beta plait (InterPro:IPR012677), RNA recognition
motif-related (InterPro:IPR015464); BEST Arabidopsis
thaliana protein match is: oligouridylate binding protein
1B (TAIR:AT1G17370.1); Has 13292 Blast hits to 10995
proteins in 692 species: Archae - 0; Bacteria - 989;
Metazoa - 6848; Fungi - 1697; Plants - 2705; Viruses - 0;
Other Eukaryotes - 1053 (source: NCBI BLink)."
/db_xref="TAIR:AT3G04500"
/db_xref="Araport:AT3G04500"
intron_pos 76:0 (1/5)
intron_pos 135:1 (2/5)
intron_pos 168:0 (3/5)
intron_pos 200:1 (4/5)
intron_pos 229:0 (5/5)
BEGIN
1 MSIPPSSGSS SSSSSSQYTY AANSYYSAPY QPPQPYAAAP SPAVPAPVAS IPGATVYPQP
61 VGPVPAVYAY PQYQQAHQLF QRDAQTITPE ALENVKAALA SSETEHKAET KKRAIPRKAA
121 GQSWEDPTLS EWPENDYRLF CGDLGNEVND DVLSKAFARF PTFNMAKVIR DKRTGKTKGY
181 GFVSFLNPAD LAAALKEMNG KYVGNRPIKL RKSSWKERTD QEAAERQKHH SNKKQKTVKK
241 SILHK
//