LOCUS AEC10935.1 344 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Exonuclease family protein protein.
ACCESSION CP002685-7579
PROTEIN_ID AEC10935.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G48100"
/inference="Similar to RNA sequence,
EST:INSD:AV786718.1,INSD:CD529749.1,INSD:BP670281.1,
INSD:ES027264.1,INSD:BP647217.1,INSD:BP652463.1,
INSD:BP563516.1,INSD:BP655363.1,INSD:BP623544.1,
INSD:ES079139.1,INSD:DR351209.1,INSD:ES185106.1,
INSD:EL242158.1,INSD:BP640517.1,INSD:ES076524.1,
INSD:BP645161.1,INSD:ES045067.1,INSD:BP580822.1,
INSD:CF773457.1,INSD:BP667794.1,INSD:ES101186.1,
INSD:ES192053.1,INSD:BX838572.1,INSD:DR381276.1,
INSD:Z35034.1,INSD:ES109996.1,INSD:AV519139.1,
INSD:ES151684.1,INSD:BP790154.1,INSD:BP594387.1,
INSD:BP644206.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY081469.1,INSD:BX821345.1"
/note="Exonuclease family protein; FUNCTIONS IN: zinc ion
binding, exonuclease activity, nucleic acid binding;
INVOLVED IN: biological_process unknown; LOCATED IN:
intracellular; EXPRESSED IN: 22 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880),
Exonuclease (InterPro:IPR006055), Polynucleotidyl
transferase, ribonuclease H fold (InterPro:IPR012337),
Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease,
RNase T/DNA polymerase III (InterPro:IPR013520); BEST
Arabidopsis thaliana protein match is: Exonuclease family
protein (TAIR:AT5G40310.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria - 22429;
Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0;
Other Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="Araport:AT2G48100"
/db_xref="TAIR:AT2G48100"
intron_pos 14:2 (1/6)
intron_pos 67:1 (2/6)
intron_pos 114:0 (3/6)
intron_pos 179:2 (4/6)
intron_pos 242:2 (5/6)
intron_pos 269:2 (6/6)
BEGIN
1 MDSQLNPSKR RKISVRHRCV ACYKMFNRRE HLVEHMKISY HSLHQPRCGV CLKHCKSFES
61 VREHLNVPDH LSKGNCKAIF TKRGCTLCLQ IFEEAFALAE HKNKCHLSPP RPLGTSTQRN
121 PSSSLAGSRL KAMALDCEMV GGGADGTIDQ CASVCLVDDD ENVIFSTHVQ PLLPVTDYRH
181 EITGLTKEDL KDGMPLEHVR ERVFSFLCGG QNDGAGRLLL VGHDLRHDMS CLKLEYPSHL
241 LRDTAKYVPL MKTNLVSQSL KYLTKSYLGY KIQCGKHEVY EDCVSAMRLY KRMRDQEHVC
301 SGKAEGNGLN SRKQSDLEKM NAEELYQKST SEYRCWCLDR LSNP
//