LOCUS AEC10897.1 468 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Zinc finger C-x8-C-x5-C-x3-H type
family protein protein.
ACCESSION CP002685-7523
PROTEIN_ID AEC10897.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G47850"
/gene_synonym="F17A22.24"
/inference="Similar to RNA sequence,
EST:INSD:ES070707.1,INSD:EL979930.1,INSD:EL246526.1,
INSD:EH795866.1,INSD:AU227845.1,INSD:N38418.1,
INSD:AU236845.1,INSD:EL977606.1,INSD:BE520448.1,
INSD:EH832519.1,INSD:AV553282.1,INSD:DR364916.1,
INSD:ES071719.1,INSD:ES111569.1,INSD:BE520447.1,
INSD:ES158237.1,INSD:EL327339.1,INSD:BE520449.1,
INSD:CF773583.1,INSD:EL978631.1,INSD:AV560299.1,
INSD:DR364919.1,INSD:AI998652.1,INSD:BX834750.1,
INSD:ES179796.1,INSD:DR364921.1,INSD:BX837406.1,
INSD:BP606852.1,INSD:AV557093.1,INSD:BG459576.1,
INSD:BX837894.1,INSD:BE528844.1,INSD:AV565890.1,
INSD:EL252440.1,INSD:EH993531.1,INSD:ES151736.1,
INSD:DR364920.1,INSD:BP829313.1,INSD:AV534551.1,
INSD:BE526244.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT004106.1,INSD:BT030391.1"
/note="Zinc finger C-x8-C-x5-C-x3-H type family protein;
FUNCTIONS IN: zinc ion binding, nucleic acid binding;
INVOLVED IN: biological_process unknown; EXPRESSED IN: 22
plant structures; EXPRESSED DURING: 13 growth stages;
CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type
(InterPro:IPR000571); BEST Arabidopsis thaliana protein
match is: Zinc finger C-x8-C-x5-C-x3-H type family protein
(TAIR:AT5G18550.1); Has 1724 Blast hits to 1003 proteins
in 159 species: Archae - 0; Bacteria - 7; Metazoa - 368;
Fungi - 218; Plants - 971; Viruses - 0; Other Eukaryotes -
160 (source: NCBI BLink)."
/db_xref="Araport:AT2G47850"
/db_xref="TAIR:AT2G47850"
intron_pos 30:1 (1/6)
intron_pos 77:0 (2/6)
intron_pos 98:0 (3/6)
intron_pos 138:0 (4/6)
intron_pos 234:0 (5/6)
intron_pos 337:0 (6/6)
BEGIN
1 MYARNPPLNG SQSAQAPDWT PADADTGLQE SMWRLGLGSD SYPERPGAPD CAYYMRTGVC
61 GYGNRCRYNH PRDRASVEAT VRATGQYPER FGEPPCQFYL KTGTCKFGAS CKFHHPKNAG
121 GSMSHVPLNI YGYPVREGDN ECSYYLKTGQ CKFGITCKFH HPQPAGTTVP PPPASAPQFY
181 PSVQSLMPDQ YGGPSSSLRV ARTLLPGSYM QGAYGPMLLT PGVVPIPGWS PYSAPVSPAL
241 SPGAQHAVGA TSLYGVTQLT STTPSLPGVY PSLSSPTGVI QKEQAFPERP GEPECQYYLK
301 TGDCKFGTSC KFHHPRDRVP PRANCVLSPI GLPLRPGVQR CTFYVQNGFC KFGSTCKFDH
361 PMGTIRYNPS ASSLADAPVA PYPVSSLLGA LAAAPSSSST ELIAGGAKDA YMTGVPTSRS
421 TSNISAGLIF SQSGGSIPFS ELQLSSQSSL PLTGSRITRQ GREIRRSF
//