LOCUS AEC10878.1 358 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RING/U-box superfamily protein protein.
ACCESSION CP002685-7500
PROTEIN_ID AEC10878.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="RFI2"
/locus_tag="AT2G47700"
/gene_synonym="F17A22.9"
/gene_synonym="RED AND FAR-RED INSENSITIVE 2"
/inference="Similar to RNA sequence,
EST:INSD:EL016563.1,INSD:AV811584.1,INSD:R65046.1,
INSD:DR364640.1,INSD:T04778.1,INSD:CB263576.1,
INSD:EL248174.1,INSD:EL338017.1,INSD:CF774164.1,
INSD:EL053374.1,INSD:EL324287.1,INSD:BP839098.1,
INSD:EH804894.1,INSD:EL253682.1,INSD:BP781586.1,
INSD:EL214940.1,INSD:EH946049.1,INSD:EL281392.1,
INSD:EL038505.1,INSD:EH994916.1,INSD:BP664522.1,
INSD:EH993744.1,INSD:DR364639.1,INSD:EL029466.1,
INSD:EL284955.1,INSD:BP785357.1,INSD:BP665590.1,
INSD:DR355865.1,INSD:BP821328.1,INSD:EL037571.1,
INSD:AV809718.1,INSD:BP833463.1,INSD:AV439501.2,
INSD:EL214810.1,INSD:AV521875.1,INSD:BP596024.1,
INSD:DR750188.1,INSD:BP659302.1,INSD:AV786388.1,
INSD:BP661014.1,INSD:BP851517.1,INSD:BP644031.1,
INSD:BP631362.1,INSD:EL070380.1,INSD:EH822979.1,
INSD:EH992236.1,INSD:EH930470.1,INSD:EL291433.1,
INSD:EL161901.1,INSD:BP817708.1,INSD:BP659804.1,
INSD:EL117758.1,INSD:EL037031.1,INSD:ES015400.1,
INSD:BP581087.1,INSD:EL257063.1,INSD:EH976279.1,
INSD:AV441538.1,INSD:EL228961.1,INSD:EL319835.1,
INSD:EL124817.1,INSD:AV825642.1,INSD:AV559703.1,
INSD:EL093120.1,INSD:EL082506.1,INSD:EH830578.1,
INSD:EL175720.1,INSD:EL250302.1,INSD:BP844987.1,
INSD:BP626258.1,INSD:BP656011.1,INSD:EH896477.1,
INSD:EH892941.1,INSD:EH809139.1,INSD:ES206985.1,
INSD:T42661.1,INSD:EH838667.1,INSD:EL197537.1,
INSD:BP571986.1,INSD:EL069138.1,INSD:EH895245.1,
INSD:ES005056.1,INSD:AV805272.1,INSD:EH944892.1,
INSD:EL162560.1,INSD:AV809784.1,INSD:BP630094.1,
INSD:EL174938.1,INSD:EH881953.1,INSD:EL287208.1,
INSD:EH975969.1,INSD:EL188179.1,INSD:EL224835.1,
INSD:EL181937.1,INSD:ES148966.1,INSD:BP820647.1,
INSD:EL309617.1,INSD:DR364638.1,INSD:AV805459.1,
INSD:BP671164.1,INSD:BP852162.1,INSD:DR750176.1,
INSD:EL043533.1,INSD:EL025153.1,INSD:EL132366.1,
INSD:AV791826.1,INSD:EL063266.1,INSD:EL134882.1,
INSD:BP618801.1,INSD:EL169202.1,INSD:DR750177.1,
INSD:BP848674.1,INSD:AV441945.1,INSD:EL039274.1,
INSD:ES039686.1,INSD:EH823011.1,INSD:ES012477.1,
INSD:EL151994.1,INSD:BP585190.1,INSD:EH869122.1,
INSD:EL335302.1,INSD:EH932360.1,INSD:DR364641.1,
INSD:BP660433.1,INSD:EL213296.1,INSD:EL249705.1,
INSD:EH887558.1,INSD:EH901354.1,INSD:AI100380.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT008845.1,INSD:BX820865.1,INSD:DQ086859.1,
INSD:BX820224.1,INSD:BX820542.1,INSD:BX820072.1,
INSD:BT002412.1"
/note="RED AND FAR-RED INSENSITIVE 2 (RFI2); CONTAINS
InterPro DOMAIN/s: Zinc finger, RING-type
(InterPro:IPR001841), Zinc finger, C3HC4 RING-type
(InterPro:IPR018957); BEST Arabidopsis thaliana protein
match is: RING/U-box superfamily protein
(TAIR:AT3G05545.1); Has 457 Blast hits to 456 proteins in
77 species: Archae - 0; Bacteria - 0; Metazoa - 168; Fungi
- 17; Plants - 198; Viruses - 0; Other Eukaryotes - 74
(source: NCBI BLink)."
/db_xref="Araport:AT2G47700"
/db_xref="TAIR:AT2G47700"
intron_pos 65:1 (1/5)
intron_pos 123:0 (2/5)
intron_pos 142:2 (3/5)
intron_pos 151:1 (4/5)
intron_pos 247:2 (5/5)
BEGIN
1 MAGAKDSGCD DDLRIAGGCD PGKRGNPEDS SSPVEVSCSI CLESVLDDGT RSKAKLQCGH
61 QFHLDCIGSA FNMKGAMQCP NCRNVEKGQW LYANGSTRPF PEFSMEDWIP EEDLYGLSYP
121 EMQYRVHWCP FGELSQAAAS FEELEPATTT YHTEFHGHHA AAVNHSYLAY VGPGPAATPR
181 TSDNNSTDDH PWNSHSNDHF HQLPVAPQYH HHSPSFSLPA AHVVDGEVDS SAARGLPYAH
241 PFLFSHRSNQ RSSPAINSYQ GSSTQMREQH HAYNHQRQQH HANGPTLASP LISMTRRGLP
301 PPPPPPPMPD QNVGFFIYPG GHHEPETDQI HAWERDWFPH FPVPSNHRTI PSLWHRHF
//