LOCUS AEC10869.1 108 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Small nuclear ribonucleoprotein family
protein protein.
ACCESSION CP002685-7492
PROTEIN_ID AEC10869.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G47640"
/gene_synonym="F17A22.3"
/inference="Similar to RNA sequence,
EST:INSD:DR324553.1,INSD:ES165040.1,INSD:DR324552.1,
INSD:BP656800.1,INSD:ES197913.1,INSD:BP647831.1,
INSD:ES118954.1,INSD:AV782529.1,INSD:AV788561.1,
INSD:DR383248.1,INSD:BP582514.1,INSD:EL014067.1,
INSD:ES212623.1,INSD:ES072537.1,INSD:BP623210.1,
INSD:EL098157.1,INSD:ES174104.1,INSD:EL113244.1,
INSD:EL134010.1,INSD:AV533768.1,INSD:AV549536.1,
INSD:BP571612.1,INSD:AU226468.1,INSD:EG515012.1,
INSD:EH885224.1,INSD:DR324549.1,INSD:BP643420.1,
INSD:EH891738.1,INSD:BP593145.1,INSD:EH955335.1,
INSD:DR324551.1,INSD:EH958806.1,INSD:ES186054.1,
INSD:BP564295.1,INSD:BP562727.3,INSD:EL055452.1,
INSD:ES159399.1,INSD:AV799638.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK227792.1,INSD:BX821379.1"
/note="Small nuclear ribonucleoprotein family protein;
FUNCTIONS IN: molecular_function unknown; LOCATED IN:
nucleolus, nucleus, small nucleolar ribonucleoprotein
complex; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Like-Sm ribonucleoprotein (LSM) domain
(InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)
domain, eukaryotic/archaea-type (InterPro:IPR006649),
Like-Sm ribonucleoprotein (LSM)-related domain
(InterPro:IPR010920); BEST Arabidopsis thaliana protein
match is: Small nuclear ribonucleoprotein family protein
(TAIR:AT3G62840.2); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="Araport:AT2G47640"
/db_xref="TAIR:AT2G47640"
intron_pos 2:2 (1/4)
intron_pos 11:0 (2/4)
intron_pos 36:0 (3/4)
intron_pos 71:0 (4/4)
BEGIN
1 MSKPMEEDTN GKTEEEEFNT GPLSVLMMSV KNNTQVLINC RNNRKLLGRV RAFDRHCNMV
61 LENVREMWTE VPKTGKGKKK ALPVNRDRFI SKMFLRGDSV IIVLRNPK
//