LOCUS AEC10867.1 109 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Small nuclear ribonucleoprotein family
protein protein.
ACCESSION CP002685-7489
PROTEIN_ID AEC10867.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G47640"
/gene_synonym="F17A22.3"
/inference="Similar to RNA sequence,
EST:INSD:ES165040.1,INSD:BP656800.1,INSD:ES197913.1,
INSD:BP647831.1,INSD:ES118954.1,INSD:AV782529.1,
INSD:AV788561.1,INSD:DR383248.1,INSD:EL014067.1,
INSD:BP582514.1,INSD:ES212623.1,INSD:BP623210.1,
INSD:EL098157.1,INSD:ES174104.1,INSD:EL113244.1,
INSD:EL134010.1,INSD:AV533768.1,INSD:AV549536.1,
INSD:BP571612.1,INSD:BP851641.1,INSD:AU226468.1,
INSD:EG515012.1,INSD:EH885224.1,INSD:BP665200.1,
INSD:BP643420.1,INSD:EH891738.1,INSD:BP593145.1,
INSD:EH955335.1,INSD:AI998209.1,INSD:EH958806.1,
INSD:ES186054.1,INSD:DR324550.1,INSD:DR324547.1,
INSD:BP851888.1,INSD:BP564295.1,INSD:ES159399.1,
INSD:EL055452.1,INSD:AV799638.1,INSD:DR374056.1"
/inference="similar to RNA sequence, mRNA:INSD:AY086601.1"
/note="Small nuclear ribonucleoprotein family protein;
FUNCTIONS IN: molecular_function unknown; LOCATED IN:
nucleolus, nucleus, small nucleolar ribonucleoprotein
complex; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Like-Sm ribonucleoprotein (LSM) domain
(InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)
domain, eukaryotic/archaea-type (InterPro:IPR006649),
Like-Sm ribonucleoprotein (LSM)-related domain
(InterPro:IPR010920); BEST Arabidopsis thaliana protein
match is: Small nuclear ribonucleoprotein family protein
(TAIR:AT3G62840.1); Has 791 Blast hits to 791 proteins in
229 species: Archae - 2; Bacteria - 0; Metazoa - 328;
Fungi - 181; Plants - 143; Viruses - 0; Other Eukaryotes -
137 (source: NCBI BLink)."
/db_xref="Araport:AT2G47640"
/db_xref="TAIR:AT2G47640"
intron_pos 2:2 (1/4)
intron_pos 11:0 (2/4)
intron_pos 37:0 (3/4)
intron_pos 72:0 (4/4)
BEGIN
1 MSKPMEEDTN QGKTEEEEFN TGPLSVLMMS VKNNTQVLIN CRNNRKLLGR VRAFDRHCNM
61 VLENVREMWT EVPKTGKGKK KALPVNRDRF ISKMFLRGDS VIIVLRNPK
//