LOCUS AEC10865.1 512 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana SWITCH/sucrose nonfermenting 3A protein.
ACCESSION CP002685-7484
PROTEIN_ID AEC10865.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="SWI3A"
/locus_tag="AT2G47620"
/gene_synonym="ATSWI3A"
/gene_synonym="CHB1"
/gene_synonym="SWITCH/sucrose nonfermenting 3A"
/gene_synonym="T30B22.7"
/inference="Similar to RNA sequence,
EST:INSD:ES162824.1,INSD:EL246987.1,INSD:AV784753.1,
INSD:EL288174.1,INSD:AV823721.1,INSD:EL183385.1,
INSD:BP586639.1,INSD:BP646195.1,INSD:BP783122.1,
INSD:BP789836.1,INSD:EL301075.1,INSD:AA395713.1,
INSD:EL267279.1,INSD:BP813762.1,INSD:ES160793.1,
INSD:BP829250.1,INSD:ES210295.1,INSD:T22373.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY081570.1,INSD:AY062794.1"
/note="SWITCH/sucrose nonfermenting 3A (SWI3A); FUNCTIONS
IN: DNA binding; INVOLVED IN: chromatin remodeling;
LOCATED IN: SWI/SNF complex; EXPRESSED IN: 13 plant
structures; EXPRESSED DURING: 6 growth stages; CONTAINS
InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005),
Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding
(InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT,
eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana
protein match is: SWITCH/sucrose nonfermenting 3C
(TAIR:AT1G21700.1); Has 887 Blast hits to 703 proteins in
193 species: Archae - 0; Bacteria - 3; Metazoa - 393;
Fungi - 212; Plants - 178; Viruses - 0; Other Eukaryotes -
101 (source: NCBI BLink)."
/db_xref="Araport:AT2G47620"
/db_xref="TAIR:AT2G47620"
intron_pos 20:1 (1/6)
intron_pos 194:0 (2/6)
intron_pos 343:0 (3/6)
intron_pos 389:2 (4/6)
intron_pos 406:1 (5/6)
intron_pos 455:0 (6/6)
BEGIN
1 MEATDPSAEI ELYTIPAQSS WFLWDDIHEI ERREFAEFFT ESSITRTPKV YKEYRDFIIN
61 KFREDTCRRL TFTSVRKFLV GDVNLLQKVF LFLEKWGLIN FSSSLKKNDH LLSVDNAKIE
121 QGTPAGIRVT ATPNSLRPIT APPLVEERVE TGIKVPPLTS YSDVFSDLKK PDHVLVCAHC
181 GERCDSPFYQ HNKGIVNICE KCFKNGNYGE NNTADDFKLI GNSAAAVWTE EEILLLLESV
241 LKHGDDWELI SQSVSTKSRL DCISKLIELP FGEFLMGSAS GRLNPSILTE DENTEQVQTD
301 GQEHEETETR EEKEDRVNED EPPAKRKRVA LISEGDSSLM KQVAAMASKV GPSVATAAAK
361 AALAALCDEA SCPKEIFDTD DYSNFTVDRA NGEKDTDMEE QQEEKDGPQG LPVALRIRAS
421 VATALGAAAA QAKILADQEE REMEQLAATV IEQQLKKLQS KLKFLDDLES IMDEEEKVIE
481 GVKETIIQER VSVLQCAFRS GITKRWDHTY VK
//