LOCUS AEC10815.1 469 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana polyribonucleotide phosphorylase,
putative (DOMAIN OF UNKNOWN FUNCTION 724 5) protein.
ACCESSION CP002685-7422
PROTEIN_ID AEC10815.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="DUF5"
/locus_tag="AT2G47220"
/gene_synonym="ATDUF5"
/gene_synonym="DOMAIN OF UNKNOWN FUNCTION 724 5"
/gene_synonym="T8I13.6"
/inference="Similar to RNA sequence,
EST:INSD:DR225452.1,INSD:AI999230.1,INSD:AV791439.1,
INSD:AV825514.1,INSD:AU229736.1"
/note="DOMAIN OF UNKNOWN FUNCTION 724 5 (DUF5); FUNCTIONS
IN: 3'-5'-exoribonuclease activity, oxidoreductase
activity, RNA binding; INVOLVED IN: metabolic process, RNA
processing; LOCATED IN: nucleus; EXPRESSED IN: 8 plant
structures; EXPRESSED DURING: lateral root emergence;
CONTAINS InterPro DOMAIN/s: Ribosomal protein S5 domain
2-type fold (InterPro:IPR020568), Protein of unknown
function DUF724 (InterPro:IPR007930), Short-chain
dehydrogenase/reductase SDR (InterPro:IPR002198); BEST
Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN
FUNCTION 724 2 (TAIR:AT1G11420.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="Araport:AT2G47220"
/db_xref="TAIR:AT2G47220"
intron_pos 31:0 (1/8)
intron_pos 54:0 (2/8)
intron_pos 89:2 (3/8)
intron_pos 104:0 (4/8)
intron_pos 162:0 (5/8)
intron_pos 187:1 (6/8)
intron_pos 233:2 (7/8)
intron_pos 255:1 (8/8)
BEGIN
1 MIPMTLTPSA MGLWLVPNHV SVKIPFGNRE ILVETGLMGR QASSAVTVTD GETIVFTSVC
61 LADVPSEPSD FLPLYVHYQE RFSAVGRTSG GFFKREGRTK DHEVTFLCLP AASYITGQEE
121 LKACLNDWKS NGLVVSGLVR DQREKLIQEV SSTFSGKLNI LSPLAQGSGN NMGGSVMNGN
181 TPPSLDSNES VSPVTSSPVI TSTPLEHTEA GTKGKTVPKK TLQPMEMNQL ERSEDNSRKR
241 KRGELEHNSD LNETVLPSDW TPDPVKNFAA DDDDEETKAK DATMVLPFVK KSPVWKIYES
301 MEVFKRVPQS PHFSPLFEAK EDFREGFALG MMVTFSGVLE KVEDLKTDVP IRQLNSLKDS
361 FTELEKHGFT VTAPLSRIAK LLALKDRQLK ILEELKVFDK EMKDESSKKH KAEQEFGEME
421 RKILEVKNKV LELQKQEAAL EKQKDATYEK ICKMESRARD LGVELEDVE
//