LOCUS AEC10798.1 881 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana squamosa promoter binding protein-
like 1 protein.
ACCESSION CP002685-7396
PROTEIN_ID AEC10798.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="SPL1"
/locus_tag="AT2G47070"
/gene_synonym="F14M4.10"
/gene_synonym="squamosa promoter binding protein-like 1"
/gene_synonym="SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1"
/inference="Similar to RNA sequence,
EST:INSD:DR750065.1,INSD:EL081893.1,INSD:EL013063.1,
INSD:ES052996.1,INSD:AV806180.1,INSD:AV559861.1,
INSD:EL230058.1,INSD:DR380653.1,INSD:ES011969.1,
INSD:EL070901.1,INSD:AV546097.1,INSD:EG477564.1,
INSD:AV522343.1,INSD:EG487507.1,INSD:BP788768.1,
INSD:BP792955.1,INSD:AV547203.1,INSD:BP565334.1,
INSD:EG420964.1,INSD:BE530234.1,INSD:AA042466.1,
INSD:BE038199.1,INSD:AV546643.1,INSD:EL150236.1,
INSD:EG487509.1,INSD:ES107617.1,INSD:CB258147.1,
INSD:EG487504.1,INSD:BP804103.1,INSD:CB257510.1,
INSD:ES052446.1,INSD:ES051504.1,INSD:AV782220.1,
INSD:BP571117.1,INSD:AV821692.1,INSD:EH992717.1,
INSD:AV551259.1,INSD:DR750382.1,INSD:AV804926.1,
INSD:AV530220.1,INSD:EG487503.1,INSD:AV816111.1,
INSD:EH907706.1,INSD:BP612605.1,INSD:BP785488.1,
INSD:EG482636.1,INSD:H36838.1,INSD:ES088700.1,
INSD:ES066202.1,INSD:BP792194.1,INSD:CB254699.1,
INSD:BP636030.1,INSD:BP785112.1,INSD:EL255444.1,
INSD:AV802514.1,INSD:BP581259.1,INSD:AV550409.1,
INSD:DR277053.1,INSD:EG501137.1,INSD:EL190751.1,
INSD:EL302594.1,INSD:BP568426.1,INSD:EG477575.1,
INSD:EG482637.1,INSD:ES199182.1,INSD:AV547403.1,
INSD:BP803315.1,INSD:BP790782.1,INSD:EG501136.1,
INSD:ES153715.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK230269.1,INSD:AJ011629.1,INSD:AJ011628.1"
/note="squamosa promoter binding protein-like 1 (SPL1);
FUNCTIONS IN: DNA binding, sequence-specific DNA binding
transcription factor activity; INVOLVED IN: regulation of
transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; CONTAINS
InterPro DOMAIN/s: Transcription factor, SBP-box
(InterPro:IPR004333), Ankyrin repeat-containing domain
(InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110);
BEST Arabidopsis thaliana protein match is: squamosa
promoter-binding protein-like 12 (TAIR:AT3G60030.1); Has
940 Blast hits to 885 proteins in 46 species: Archae - 0;
Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 930;
Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink)."
/db_xref="Araport:AT2G47070"
/db_xref="TAIR:AT2G47070"
intron_pos 152:2 (1/9)
intron_pos 212:1 (2/9)
intron_pos 359:0 (3/9)
intron_pos 384:0 (4/9)
intron_pos 420:0 (5/9)
intron_pos 459:1 (6/9)
intron_pos 506:2 (7/9)
intron_pos 559:0 (8/9)
intron_pos 741:0 (9/9)
BEGIN
1 MEARIDEGGE AQQFYGSVGK RSVEWDLNDW KWDGDLFLAT QTTRGRQFFP LGNSSNSSSS
61 CSDEGNDKKR RAVAIQGDTN GALTLNLNGE SDGLFPAKKT KSGAVCQVEN CEADLSKVKD
121 YHRRHKVCEM HSKATSATVG GILQRFCQQC SRFHLLQEFD EGKRSCRRRL AGHNKRRRKT
181 NPEPGANGNP SDDHSSNYLL ITLLKILSNM HNHTGDQDLM SHLLKSLVSH AGEQLGKNLV
241 ELLLQGGGSQ GSLNIGNSAL LGIEQAPQEE LKQFSARQDG TATENRSEKQ VKMNDFDLND
301 IYIDSDDTDV ERSPPPTNPA TSSLDYPSWI HQSSPPQTSR NSDSASDQSP SSSSEDAQMR
361 TGRIVFKLFG KEPNEFPIVL RGQILDWLSH SPTDMESYIR PGCIVLTIYL RQAETAWEEL
421 SDDLGFSLGK LLDLSDDPLW TTGWIYVRVQ NQLAFVYNGQ VVVDTSLSLK SRDYSHIISV
481 KPLAIAATEK AQFTVKGMNL RQRGTRLLCS VEGKYLIQET THDSTTREDD DFKDNSEIVE
541 CVNFSCDMPI LSGRGFMEIE DQGLSSSFFP FLVVEDDDVC SEIRILETTL EFTGTDSAKQ
601 AMDFIHEIGW LLHRSKLGES DPNPGVFPLI RFQWLIEFSM DREWCAVIRK LLNMFFDGAV
661 GEFSSSSNAT LSELCLLHRA VRKNSKPMVE MLLRYIPKQQ RNSLFRPDAA GPAGLTPLHI
721 AAGKDGSEDV LDALTEDPAM VGIEAWKTCR DSTGFTPEDY ARLRGHFSYI HLIQRKINKK
781 STTEDHVVVN IPVSFSDREQ KEPKSGPMAS ALEITQIPCK LCDHKLVYGT TRRSVAYRPA
841 MLSMVAIAAV CVCVALLFKS CPEVLYVFQP FRWELLDYGT S
//