LOCUS AEC10620.1 342 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana SKP1-like 20 protein.
ACCESSION CP002685-7143
PROTEIN_ID AEC10620.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="SK20"
/locus_tag="AT2G45950"
/gene_synonym="ASK20"
/gene_synonym="F4I18.7"
/gene_synonym="SKP1-like 20"
/inference="Similar to RNA sequence,
EST:INSD:BX840052.1,INSD:EG466166.1,INSD:AV832221.1,
INSD:CD531978.1,INSD:EL287612.1,INSD:EG433190.1,
INSD:DR382741.1,INSD:EL323339.1,INSD:EG466167.1,
INSD:EL118072.1,INSD:EL134864.1,INSD:EL294441.1,
INSD:AV819703.1,INSD:DR358148.1,INSD:ES210491.1"
/inference="similar to RNA sequence, mRNA:INSD:BX818824.1"
/note="SKP1-like 20 (SK20); FUNCTIONS IN:
ubiquitin-protein ligase activity; INVOLVED IN:
ubiquitin-dependent protein catabolic process; LOCATED IN:
SCF ubiquitin ligase complex; EXPRESSED IN: 7 plant
structures; EXPRESSED DURING: L mature pollen stage, M
germinated pollen stage, seedling growth; CONTAINS
InterPro DOMAIN/s: SKP1 component, dimerisation
(InterPro:IPR016072), SKP1 component (InterPro:IPR001232),
BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis
thaliana protein match is: SKP1-like 21
(TAIR:AT3G61415.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="Araport:AT2G45950"
/db_xref="TAIR:AT2G45950"
intron_pos 13:0 (1/8)
intron_pos 88:0 (2/8)
intron_pos 152:0 (3/8)
intron_pos 189:0 (4/8)
intron_pos 212:1 (5/8)
intron_pos 243:0 (6/8)
intron_pos 300:2 (7/8)
intron_pos 339:1 (8/8)
BEGIN
1 MSEGDLAVMK PETMKSYIWL QTADGSIQQV EQEVAMFCPM ICQEVIQKGV GSSKNHAISL
61 PQRVNPAMFS LILDYCRFHQ LPGRSNKERK TYDERFIRMD TKRLCELTSA ADSLQLKPLV
121 DLTSRALARI IEGKNPEEIR EIFHLPDDLT EEEKLEPLKN SMDDPRIRLL NRLYAKKRKE
181 LKERERLKNV EVEEHVDERS VDDLLSFING RDHKAVKMSK GKKKKKKKKD QKIVSSNNIH
241 DKESHDLRSK QQCVEEIGSS MREVPNLLSA EDDISTPNAG SEDEDIDDEI DPAMRELLDR
301 EVEDFAQRLN SNWVRSLGKE RRPVHFSING NGTTRRHTGQ SP
//