LOCUS AEC10540.1 286 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA 2'-phosphotransferase, Tpt1 /
KptA family protein.
ACCESSION CP002685-7026
PROTEIN_ID AEC10540.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="emb1067"
/locus_tag="AT2G45330"
/gene_synonym="2' tRNA phosphotransferase"
/gene_synonym="embryo defective 1067"
/gene_synonym="F4L23.16"
/gene_synonym="TRPT"
/inference="Similar to RNA sequence,
EST:INSD:CD533014.1,INSD:BP828951.1,INSD:ES193003.1,
INSD:EH897662.1,INSD:ES175433.1,INSD:AA585768.1,
INSD:EL191980.1,INSD:EH975652.1,INSD:EL236798.1,
INSD:BP583713.1,INSD:EL012896.1,INSD:EL996167.1,
INSD:ES069283.1,INSD:BP823469.1,INSD:EH957535.1,
INSD:EL150230.1,INSD:EL318408.1,INSD:EL137487.1,
INSD:EL122074.1,INSD:EL294496.1"
/note="embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA
2'-phosphotransferase activity, transferase activity,
transferring phosphorus-containing groups; INVOLVED IN:
tRNA splicing, via endonucleolytic cleavage and ligation,
embryo development ending in seed dormancy; EXPRESSED IN:
male gametophyte, pollen tube; EXPRESSED DURING: L mature
pollen stage, M germinated pollen stage; CONTAINS InterPro
DOMAIN/s: Phosphotransferase KptA/Tpt1
(InterPro:IPR002745); BEST Arabidopsis thaliana protein
match is: RNA 2'-phosphotransferase, Tpt1 / KptA family
(TAIR:AT5G23600.1); Has 35333 Blast hits to 34131 proteins
in 2444 species: Archae - 798; Bacteria - 22429; Metazoa -
974; Fungi - 991; Plants - 531; Viruses - 0; Other
Eukaryotes - 9610 (source: NCBI BLink)."
/db_xref="Araport:AT2G45330"
/db_xref="TAIR:AT2G45330"
intron_pos 55:2 (1/7)
intron_pos 88:2 (2/7)
intron_pos 138:0 (3/7)
intron_pos 168:0 (4/7)
intron_pos 186:1 (5/7)
intron_pos 227:1 (6/7)
intron_pos 246:1 (7/7)
BEGIN
1 MLLRLCRHRL PLPLTLSSSV FFSKSSPVSS AFMDASNPNS SRKSNVSSFA QSSRRGGGYE
61 RDNDRRRPQG RGDGGGGKDR IDALGRLLTR ILRHMATELR LNMRGDGFVK VEDLLNLNLK
121 TSANIQLKSH TIDEIREAVR RDNKQRFSLI DENGELLIRA NQGHSITTVE SEKLLKPILS
181 PEEAPVCVHG TYRKNLESIL ASGLKRMNRM HVHFSCGLPT DGEVISGMRR NVNVIIFLDI
241 KKALEDGIAF YISDNKVILT EGIDGVLPVD YFQKIESWPD RQSIPF
//