LOCUS AEC10539.1 289 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA 2'-phosphotransferase, Tpt1 /
KptA family protein.
ACCESSION CP002685-7025
PROTEIN_ID AEC10539.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="emb1067"
/locus_tag="AT2G45330"
/gene_synonym="2' tRNA phosphotransferase"
/gene_synonym="embryo defective 1067"
/gene_synonym="F4L23.16"
/gene_synonym="TRPT"
/inference="Similar to RNA sequence,
EST:INSD:AU236150.1,INSD:EH897662.1,INSD:ES175433.1,
INSD:EL191980.1,INSD:EH975652.1,INSD:EL236798.1,
INSD:EL012896.1,INSD:BP583713.1,INSD:EL996167.1,
INSD:ES069283.1,INSD:AA394922.1,INSD:EL150230.1,
INSD:EH957535.1,INSD:BP802390.1,INSD:EL122074.1,
INSD:EL137487.1,INSD:DR320063.1,INSD:CD533014.1,
INSD:ES193003.1,INSD:DR320064.1,INSD:AA585768.1,
INSD:BP851481.1,INSD:T22008.1,INSD:EL318408.1,
INSD:EL294496.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK228262.1,INSD:BT005871.1"
/note="embryo defective 1067 (emb1067); FUNCTIONS IN: tRNA
2'-phosphotransferase activity, transferase activity,
transferring phosphorus-containing groups; INVOLVED IN:
tRNA splicing, via endonucleolytic cleavage and ligation,
embryo development ending in seed dormancy; EXPRESSED IN:
male gametophyte, pollen tube; EXPRESSED DURING: L mature
pollen stage, M germinated pollen stage; CONTAINS InterPro
DOMAIN/s: Phosphotransferase KptA/Tpt1
(InterPro:IPR002745); BEST Arabidopsis thaliana protein
match is: RNA 2'-phosphotransferase, Tpt1 / KptA family
(TAIR:AT5G23600.1); Has 1059 Blast hits to 1053 proteins
in 477 species: Archae - 87; Bacteria - 561; Metazoa - 92;
Fungi - 143; Plants - 80; Viruses - 6; Other Eukaryotes -
90 (source: NCBI BLink)."
/db_xref="Araport:AT2G45330"
/db_xref="TAIR:AT2G45330"
intron_pos 55:2 (1/7)
intron_pos 91:2 (2/7)
intron_pos 141:0 (3/7)
intron_pos 171:0 (4/7)
intron_pos 189:1 (5/7)
intron_pos 230:1 (6/7)
intron_pos 249:1 (7/7)
BEGIN
1 MLLRLCRHRL PLPLTLSSSV FFSKSSPVSS AFMDASNPNS SRKSNVSSFA QSSRSGGRGG
61 GYERDNDRRR PQGRGDGGGG KDRIDALGRL LTRILRHMAT ELRLNMRGDG FVKVEDLLNL
121 NLKTSANIQL KSHTIDEIRE AVRRDNKQRF SLIDENGELL IRANQGHSIT TVESEKLLKP
181 ILSPEEAPVC VHGTYRKNLE SILASGLKRM NRMHVHFSCG LPTDGEVISG MRRNVNVIIF
241 LDIKKALEDG IAFYISDNKV ILTEGIDGVL PVDYFQKIES WPDRQSIPF
//