LOCUS AEC10488.1 295 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Integrase-type DNA-binding superfamily
protein protein.
ACCESSION CP002685-6959
PROTEIN_ID AEC10488.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G44940"
/gene_synonym="T13E15.25"
/inference="Similar to RNA sequence,
EST:INSD:EH975109.1,INSD:BP628819.1,INSD:EG439384.1,
INSD:AV565629.1,INSD:DR186583.1,INSD:DR751219.1,
INSD:EG439386.1,INSD:BP628339.1,INSD:BP669224.1,
INSD:AV555166.1,INSD:DR186581.1,INSD:AU239092.1,
INSD:DR186582.1,INSD:BP850529.2,INSD:DR186579.1,
INSD:AV565514.1,INSD:Z37651.1,INSD:DR186584.1,
INSD:AU230366.1,INSD:DR374738.1,INSD:AV566269.1,
INSD:BP622912.1,INSD:DN604751.1,INSD:BP816250.1,
INSD:DR751220.1,INSD:DR186580.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT008564.1,INSD:AY087052.1,INSD:AK229616.1,
INSD:BT008677.1,INSD:BX821183.1"
/note="Integrase-type DNA-binding superfamily protein;
FUNCTIONS IN: DNA binding, sequence-specific DNA binding
transcription factor activity; INVOLVED IN: regulation of
transcription, DNA-dependent; LOCATED IN: nucleus,
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
DNA-binding, integrase-type (InterPro:IPR016177),
Pathogenesis-related transcriptional factor/ERF,
DNA-binding (InterPro:IPR001471); BEST Arabidopsis
thaliana protein match is: Integrase-type DNA-binding
superfamily protein (TAIR:AT3G60490.1); Has 6573 Blast
hits to 6019 proteins in 323 species: Archae - 0; Bacteria
- 81; Metazoa - 170; Fungi - 124; Plants - 5956; Viruses -
0; Other Eukaryotes - 242 (source: NCBI BLink)."
/db_xref="Araport:AT2G44940"
/db_xref="TAIR:AT2G44940"
BEGIN
1 MARQINIESS VSQVTFISSA IPAVSSSSSI TASASLSSSP TTSSSSSSST NSNFIEEDNS
61 KRKASRRSLS SLVSVEDDDD QNGGGGKRRK TNGGDKHPTY RGVRMRSWGK WVSEIREPRK
121 KSRIWLGTYP TAEMAARAHD VAALAIKGTT AYLNFPKLAG ELPRPVTNSP KDIQAAASLA
181 AVNWQDSVND VSNSEVAEIV EAEPSRAVVA QLFSSDTSTT TTTQSQEYSE ASCASTSACT
241 DKDSEEEKLF DLPDLFTDEN EMMIRNDAFC YYSSTWQLCG ADAGFRLEEP FFLSE
//