LOCUS AEC10484.1 210 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Tetratricopeptide repeat (TPR)-like
superfamily protein protein.
ACCESSION CP002685-6956
PROTEIN_ID AEC10484.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G44920"
/gene_synonym="T13E15.7"
/inference="Similar to RNA sequence,
EST:INSD:ES107322.1,INSD:EH902767.1,INSD:EH948629.1,
INSD:EL034374.1,INSD:EL004694.1,INSD:EH942358.1,
INSD:EL245042.1,INSD:EL242950.1,INSD:EH994564.1,
INSD:EH878908.1,INSD:EL162235.1,INSD:EL218598.1,
INSD:EL170699.1,INSD:EL054098.1,INSD:EL244874.1,
INSD:EH847679.1,INSD:EL011749.1,INSD:EL254888.1,
INSD:EL068769.1,INSD:DR360727.1,INSD:EL103257.1,
INSD:EH882540.1,INSD:DR360728.1,INSD:ES110423.1,
INSD:EL165431.1,INSD:EL109840.1,INSD:EL083386.1,
INSD:EL021563.1,INSD:EH799618.1,INSD:EL049972.1,
INSD:EL303406.1,INSD:EL018517.1,INSD:EL179422.1,
INSD:AV442357.1,INSD:EL260111.1,INSD:EH952371.1,
INSD:EH874374.1,INSD:EL077768.1,INSD:EH895493.1,
INSD:EH797400.1,INSD:EL000123.1,INSD:AV794695.1,
INSD:EL995137.1,INSD:EL062784.1,INSD:EH880974.1,
INSD:Z29812.1,INSD:BP561590.2,INSD:EH932664.1,
INSD:EL152035.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY050941.2,INSD:BT000902.1"
/note="Tetratricopeptide repeat (TPR)-like superfamily
protein; FUNCTIONS IN: molecular_function unknown; LOCATED
IN: thylakoid, thylakoid lumen, chloroplast thylakoid
membrane, chloroplast thylakoid lumen, chloroplast;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Pentapeptide
repeat (InterPro:IPR001646); BEST Arabidopsis thaliana
protein match is: potassium channel tetramerisation
domain-containing protein / pentapeptide repeat-containing
protein (TAIR:AT5G55000.1); Has 14558 Blast hits to 5841
proteins in 857 species: Archae - 260; Bacteria - 11175;
Metazoa - 170; Fungi - 0; Plants - 186; Viruses - 55;
Other Eukaryotes - 2712 (source: NCBI BLink)."
/db_xref="Araport:AT2G44920"
/db_xref="TAIR:AT2G44920"
intron_pos 40:0 (1/5)
intron_pos 84:0 (2/5)
intron_pos 116:0 (3/5)
intron_pos 140:1 (4/5)
intron_pos 161:0 (5/5)
BEGIN
1 MVILSNVSLF SCCNISQKPS LFSPSSRSSH CPIRCSQSQE GKEVVTSPLR SVVWSLGEEV
61 SKRSLFALVS ASLFFVDPAL AFKGGGPYGQ GVTRGQDLSG KDFSGQTLIR QDFKTSILRQ
121 ANFKGAKLLG ASFFDADLTG ADLSEADLRG ADFSLANVTK VNLTNANLEG ATVTGNTSFK
181 GSNITGAGEK RKENFHNNNK HISLLPLSFT
//