LOCUS AEC10356.1 545 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding protein protein.
ACCESSION CP002685-6795
PROTEIN_ID AEC10356.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="LARP6b"
/locus_tag="AT2G43970"
/gene_synonym="AtLARP6b"
/gene_synonym="F6E13.10"
/gene_synonym="La related protein 6b"
/inference="Similar to RNA sequence,
EST:INSD:T42611.1,INSD:BP787459.1,INSD:EL126105.1,
INSD:BU636181.1,INSD:EL333145.1,INSD:BP811512.1,
INSD:EG523247.1,INSD:BP615191.1,INSD:BP575854.1,
INSD:BP583016.1,INSD:EL266247.1,INSD:EL242437.1,
INSD:EH848964.1,INSD:BP833592.1,INSD:AV803580.1,
INSD:BP605779.1,INSD:EL312272.1,INSD:EH960401.1,
INSD:CD533712.1,INSD:EH848225.1,INSD:EH882431.1,
INSD:BP603073.1,INSD:BP848521.1,INSD:EG523257.1,
INSD:AV520978.1,INSD:BP621244.1,INSD:BU636040.1,
INSD:Z26004.1,INSD:BU636172.1,INSD:BP784289.1,
INSD:BP843182.1,INSD:CF652593.1,INSD:BP852676.1,
INSD:ES005639.1,INSD:EG513487.1,INSD:EH903858.1,
INSD:BP855067.1,INSD:BP825099.1,INSD:AV536605.1,
INSD:EL329793.1,INSD:BP582081.1,INSD:EL231991.1,
INSD:EH798544.1,INSD:EG520439.1,INSD:CB256334.1,
INSD:AV793553.1,INSD:CB257690.1,INSD:BP599704.1,
INSD:EL102541.1,INSD:BP607685.1,INSD:BP659550.1,
INSD:BP587272.1,INSD:BP589051.1,INSD:AV795915.1,
INSD:AV821141.1,INSD:ES109457.1,INSD:AV805696.1,
INSD:EH897512.1,INSD:EL257590.1,INSD:BP605642.1,
INSD:EL086454.1,INSD:BP846560.1,INSD:ES186360.1,
INSD:AV809231.1,INSD:AV540408.1,INSD:BP599646.1,
INSD:ES180407.1,INSD:BP619220.1,INSD:EH978598.1,
INSD:BP798932.2,INSD:EL185702.1,INSD:EH930209.1,
INSD:BP794552.1,INSD:EL263886.1,INSD:EL015556.1,
INSD:BP596291.1,INSD:DR232479.1,INSD:BP583463.1,
INSD:BP601262.1,INSD:BP574999.1,INSD:EH927309.1,
INSD:BP671948.1,INSD:BP671075.1,INSD:EL088784.1,
INSD:EL120283.1,INSD:EG513479.1,INSD:BP618247.1,
INSD:EG513480.1,INSD:BP782241.1,INSD:DR263171.1,
INSD:AV522392.1,INSD:EL151466.1,INSD:BP644552.1,
INSD:BU636289.1,INSD:BP627855.1,INSD:BP612619.1,
INSD:BP582881.1,INSD:BP635380.1,INSD:EG523255.1,
INSD:AV538803.1,INSD:BP800187.1,INSD:BP780422.1,
INSD:EH953632.1,INSD:EH830664.1,INSD:BU635153.1,
INSD:EH951539.1,INSD:EH894436.1,INSD:EG525486.1,
INSD:EL291471.1,INSD:BP628490.1,INSD:EG525087.1,
INSD:BP645812.1,INSD:EL009303.1,INSD:R83971.1,
INSD:BP815908.1,INSD:BP565700.1,INSD:EH858451.1,
INSD:EG528260.1,INSD:BP861528.1,INSD:AV787550.1,
INSD:EL119534.1,INSD:BP615788.1,INSD:EL233000.1,
INSD:BP600437.1,INSD:BP575845.1,INSD:BP634182.1,
INSD:EH892330.1,INSD:BP817780.1,INSD:EL129473.1,
INSD:BP616896.1,INSD:EL228458.1,INSD:EH955591.1,
INSD:BP793416.1,INSD:EH817222.1,INSD:BP652835.1,
INSD:EL103799.1,INSD:EH859256.1,INSD:ES139280.1,
INSD:EH852115.1,INSD:BP782266.1,INSD:ES103544.1,
INSD:BP809479.1,INSD:BP623353.1,INSD:BP672013.1,
INSD:BP616802.1,INSD:BP795343.1,INSD:EL164405.1,
INSD:AV795891.1,INSD:BP621677.1,INSD:BP599723.1,
INSD:BP619299.1,INSD:AV799648.1,INSD:BP606500.1,
INSD:EG513488.1,INSD:BP812375.1,INSD:AV554528.1,
INSD:DR263173.1,INSD:BP808046.1,INSD:AI099519.1,
INSD:BU636527.1,INSD:BP578220.1,INSD:AV527375.1,
INSD:EL184387.1,INSD:AV554239.1,INSD:BP864165.1,
INSD:DR369724.1,INSD:AV551124.1,INSD:EH944478.1,
INSD:AV829910.1,INSD:BP630080.1,INSD:EL994612.1,
INSD:EL247840.1,INSD:AV563576.1,INSD:DR263172.1,
INSD:DR263170.1,INSD:DR263176.1,INSD:BP576059.1,
INSD:EL017446.1,INSD:BP858246.1,INSD:EL251659.1,
INSD:EL172914.1,INSD:BP616745.1,INSD:BP597908.1,
INSD:AV545506.1,INSD:ES134274.1,INSD:BP795880.1,
INSD:EG486260.1,INSD:BP781400.1,INSD:BP781999.1,
INSD:EL341553.1,INSD:EL128504.1,INSD:AV527541.1,
INSD:EL130285.1,INSD:EL237369.1,INSD:BP623036.1,
INSD:AV540365.1,INSD:BP616959.1,INSD:AV791509.1,
INSD:BP787869.1,INSD:AV827210.1,INSD:ES180642.1,
INSD:EH937943.1,INSD:BP575538.1,INSD:BP599726.1,
INSD:BP614627.1,INSD:BP606885.1,INSD:EL000628.1,
INSD:AV818194.1,INSD:AV797530.1,INSD:EL341401.1,
INSD:AA597727.1,INSD:EL212537.1,INSD:ES001356.1,
INSD:EH945289.1,INSD:BP612517.1,INSD:AV525463.1,
INSD:EH854943.1,INSD:BP865792.1,INSD:BP866038.1,
INSD:EG528259.1,INSD:BP787028.1,INSD:EL317797.1,
INSD:AV826200.1,INSD:BP631841.1,INSD:N37655.1,
INSD:BP844112.1,INSD:ES192770.1,INSD:BP605742.1,
INSD:EH977070.1,INSD:EH898554.1,INSD:EL131197.1,
INSD:BP575384.1,INSD:AV537123.1,INSD:BP579457.1,
INSD:BP858593.1,INSD:BP583184.1,INSD:ES031462.1,
INSD:ES149238.1,INSD:BP614680.1,INSD:BP865022.1,
INSD:BP845386.1,INSD:BP649272.1,INSD:EH925120.1,
INSD:EL074018.1,INSD:CB256332.1,INSD:BP843590.1,
INSD:EH805769.1,INSD:ES147993.1,INSD:N97211.1,
INSD:T76846.1,INSD:BP612913.1,INSD:EL255869.1,
INSD:BP622283.1,INSD:BP842043.1,INSD:T76715.1,
INSD:BP610116.1,INSD:EG486261.1,INSD:EG434024.1,
INSD:ES209453.1,INSD:EH914151.1,INSD:EL284807.1,
INSD:EL979582.1,INSD:EH870582.1,INSD:AI994349.1,
INSD:DR263174.1,INSD:BP618359.1,INSD:EG430452.1,
INSD:EH993198.1,INSD:EL293385.1,INSD:N96745.1,
INSD:CB256333.1,INSD:EG496244.1,INSD:EL011241.1,
INSD:EL976805.1,INSD:BP566001.1,INSD:BP575949.1,
INSD:EL217653.1,INSD:CK120321.1,INSD:BP856051.1,
INSD:AV827861.1,INSD:DR370038.1,INSD:BP668902.1,
INSD:AV542209.1,INSD:EL186808.1,INSD:BP804808.1,
INSD:BP803213.1,INSD:EH989744.1,INSD:BP564651.1,
INSD:ES151681.1,INSD:EL241628.1,INSD:BP568975.1,
INSD:BP613110.1,INSD:BP611416.1,INSD:AV527192.1,
INSD:EL325602.1,INSD:BP600208.1,INSD:AV805697.1,
INSD:BP611686.1,INSD:BP617246.1,INSD:EH971898.1,
INSD:BP853461.1,INSD:BP860139.1,INSD:EG520370.1,
INSD:BP599333.1,INSD:BP855293.1,INSD:EH917789.1,
INSD:BP579060.1,INSD:AV544182.1,INSD:AV793963.1,
INSD:EG520371.1,INSD:BP613434.1,INSD:BP600502.1,
INSD:EH861391.1,INSD:BP807799.1,INSD:BP841828.1,
INSD:EL119771.1,INSD:BP787973.1,INSD:BP666255.1,
INSD:BP632842.1,INSD:BP644695.1,INSD:BP662583.1,
INSD:BP617047.1,INSD:EL021501.1,INSD:AV551883.1,
INSD:EG520438.1,INSD:BP592340.1,INSD:BP860311.1,
INSD:EL019264.1,INSD:AV811621.1,INSD:AV831922.1,
INSD:AV544281.1,INSD:EH850869.1,INSD:BP627841.1,
INSD:EH877599.1,INSD:EL111302.1,INSD:BP830217.1,
INSD:EH822993.1,INSD:AV520746.1,INSD:EH895826.1,
INSD:AV808870.1,INSD:EL250227.1,INSD:EH867402.1,
INSD:BP800412.1,INSD:EL079143.1,INSD:EH958883.1,
INSD:BP600611.1,INSD:EL071588.1,INSD:BP602205.1,
INSD:AV524649.1,INSD:ES034330.1,INSD:CF651878.1,
INSD:ES096948.1,INSD:BP580472.1,INSD:EG440549.1,
INSD:BU636284.1,INSD:EH940817.1,INSD:DR263175.1,
INSD:BP630774.1,INSD:EL010783.1,INSD:ES153034.1,
INSD:BP570768.1,INSD:EL109537.1,INSD:AV548494.1,
INSD:CA963929.1,INSD:EL248810.1,INSD:EH818774.1,
INSD:BP661964.1,INSD:BP650764.1,INSD:BP803125.1,
INSD:BP603209.1,INSD:EH846919.1,INSD:BP608075.1,
INSD:BP576716.1,INSD:EH837636.1,INSD:AV546056.1,
INSD:BP589876.1,INSD:BP632054.1,INSD:BP602524.1,
INSD:BP843781.1,INSD:ES173888.1,INSD:EG523246.1,
INSD:EL033553.1,INSD:DR369725.1,INSD:BP783769.1,
INSD:BP601459.1,INSD:BP619681.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF332565.1,INSD:AF367277.1,INSD:AF412052.1,
INSD:AF375410.1,INSD:AY056238.1,INSD:AY129474.1,
INSD:BX821563.1"
/note="RNA-binding protein; FUNCTIONS IN: RNA binding,
nucleic acid binding; INVOLVED IN: RNA processing; LOCATED
IN: ribonucleoprotein complex, nucleus, chloroplast;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Winged
helix-turn-helix transcription repressor DNA-binding
(InterPro:IPR011991), RNA-binding protein Lupus La
(InterPro:IPR006630), Lupus La protein
(InterPro:IPR002344); BEST Arabidopsis thaliana protein
match is: RNA-binding protein (TAIR:AT3G19090.1); Has 5436
Blast hits to 4197 proteins in 373 species: Archae - 4;
Bacteria - 353; Metazoa - 1802; Fungi - 477; Plants - 426;
Viruses - 18; Other Eukaryotes - 2356 (source: NCBI
BLink)."
/db_xref="Araport:AT2G43970"
/db_xref="TAIR:AT2G43970"
intron_pos 201:0 (1/9)
intron_pos 228:1 (2/9)
intron_pos 260:0 (3/9)
intron_pos 284:0 (4/9)
intron_pos 310:2 (5/9)
intron_pos 345:0 (6/9)
intron_pos 361:0 (7/9)
intron_pos 384:0 (8/9)
intron_pos 438:0 (9/9)
BEGIN
1 MADQQTLDSS TPPPTQSDDL SHSHSTSSTT SASSSSDPSL LRSLSLSRLN AGAPEFVPGR
61 TTPPLPQPPR MIIPPPPPHG MLHMYHHQPP FNTPVLGPVP IQPHLVPVQN HHPHHRFHQH
121 HHHNRHQNQQ YVPVRNHGEY QQRGGVGGEQ EPDLVSKKND RRDHSKRESK NDQVTETGAS
181 VSIDSKTGLP EDSIQKIVNQ VEYYFSDLNL ATTDHLMRFI CKDPEGYVPI HVVASFKKIK
241 AVINNNSQLA AVLQNSAKLF VSEDGKKVRR ISPITESAIE ELQSRIIVAE NLPEDHCYQN
301 LMKIFSTVGS VKNIRTCQPQ NNGSGAPPAA RSAAKSDGTL FSNKVHAFVE YEIVELAERA
361 VTELSEAGNW RSGLKVRLML KHQTKEPKQG QGRGRKGHDA DVEHEEDDAT TSEQQPIEKQ
421 SDDCSGEWDT HMQEQPIGED QGNEKAAGQR KGRNRGRGKG RGRGQPHQNQ NQNNNHSHNQ
481 NHNHNGRGNH HHHHHHQVGT QPSNNPMNNM EQPGMGKQQP PGPRMPDGTR GFSMGRGKPV
541 MVQAE
//