LOCUS AEC10197.1 430 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana phytochrome interacting factor 4 protein.
ACCESSION CP002685-6583
PROTEIN_ID AEC10197.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="PIF4"
/locus_tag="AT2G43010"
/gene_synonym="AtPIF4"
/gene_synonym="MFL8.13"
/gene_synonym="MFL8_13"
/gene_synonym="phytochrome interacting factor 4"
/gene_synonym="SRL2"
/inference="Similar to RNA sequence,
EST:INSD:EL285389.1,INSD:EL284780.1,INSD:EL239256.1,
INSD:AV827464.1,INSD:EH909752.1,INSD:DR749594.1,
INSD:EL208465.1,INSD:T04514.1,INSD:EL094881.1,
INSD:BP834092.1,INSD:AV520090.1,INSD:AV800076.1,
INSD:AA728560.1,INSD:AV526185.1,INSD:BP816177.1,
INSD:BP840028.1,INSD:BX837187.1,INSD:DR749595.1,
INSD:EL239541.1,INSD:AV440115.1,INSD:EH855150.1,
INSD:BP843580.1,INSD:BP848428.1,INSD:EL303618.1,
INSD:BE526204.1,INSD:BP664232.1,INSD:BP625001.1,
INSD:DR368505.1,INSD:BP846421.1,INSD:EL326578.1,
INSD:EL018177.1,INSD:EH917289.1,INSD:EG462006.1,
INSD:AV820620.1,INSD:BP604631.1,INSD:AA585958.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX818841.1,INSD:AJ440755.1,INSD:AF251694.1,
INSD:BX819686.1"
/note="phytochrome interacting factor 4 (PIF4); CONTAINS
InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain
(InterPro:IPR001092), Helix-loop-helix DNA-binding
(InterPro:IPR011598); BEST Arabidopsis thaliana protein
match is: phytochrome interacting factor 3-like 6
(TAIR:AT3G59060.1); Has 4545 Blast hits to 4539 proteins
in 356 species: Archae - 0; Bacteria - 0; Metazoa - 939;
Fungi - 192; Plants - 3373; Viruses - 2; Other Eukaryotes
- 39 (source: NCBI BLink)."
/db_xref="Araport:AT2G43010"
/db_xref="TAIR:AT2G43010"
intron_pos 22:2 (1/5)
intron_pos 241:0 (2/5)
intron_pos 268:0 (3/5)
intron_pos 290:0 (4/5)
intron_pos 396:0 (5/5)
BEGIN
1 MEHQGWSFEE NYSLSTNRRS IRPQDELVEL LWRDGQVVLQ SQTHREQTQT QKQDHHEEAL
61 RSSTFLEDQE TVSWIQYPPD EDPFEPDDFS SHFFSTMDPL QRPTSETVKP KSSPEPPQVM
121 VKPKACPDPP PQVMPPPKFR LTNSSSGIRE TEMEQYSVTT VGPSHCGSNP SQNDLDVSMS
181 HDRSKNIEEK LNPNASSSSG GSSGCSFGKD IKEMASGRCI TTDRKRKRIN HTDESVSLSD
241 AIGNKSNQRS GSNRRSRAAE VHNLSERRRR DRINERMKAL QELIPHCSKT DKASILDEAI
301 DYLKSLQLQL QVMWMGSGMA AAAASAPMMF PGVQPQQFIR QIQSPVQLPR FPVMDQSAIQ
361 NNPGLVCQNP VQNQIISDRF ARYIGGFPHM QAATQMQPME MLRFSSPAGQ QSQQPSSVPT
421 KTTDGSRLDH
//