LOCUS AEC10140.1 367 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana TRICHOME BIREFRINGENCE-LIKE 39 protein.
ACCESSION CP002685-6505
PROTEIN_ID AEC10140.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="TBL39"
/locus_tag="AT2G42570"
/gene_synonym="F14N22.16"
/gene_synonym="F14N22_16"
/gene_synonym="TRICHOME BIREFRINGENCE-LIKE 39"
/inference="Similar to RNA sequence,
EST:INSD:EL997067.1,INSD:ES032327.1,INSD:DR328009.1,
INSD:DR328001.1,INSD:EL993635.1,INSD:DR328030.1,
INSD:DR328005.1,INSD:DR328031.1,INSD:EL276620.1,
INSD:EL974885.1,INSD:ES153932.1,INSD:DR328024.1,
INSD:ES027555.1,INSD:DR328020.1,INSD:DR328013.1,
INSD:DR328014.1,INSD:ES106856.1,INSD:DR328000.1,
INSD:DR328027.1,INSD:DR328032.1,INSD:DR328036.1,
INSD:EL973659.1,INSD:AV532871.1,INSD:DR328016.1,
INSD:DR328023.1,INSD:DR328018.1,INSD:DR328034.1,
INSD:BP851352.1,INSD:DR328002.1,INSD:DR328028.1,
INSD:AV535312.1,INSD:DR372772.1,INSD:AV783379.1,
INSD:CB264739.1,INSD:DR328019.1,INSD:DR328025.1,
INSD:DR328010.1,INSD:T42063.1,INSD:DR328012.1,
INSD:BP867155.1,INSD:DR328015.1,INSD:DR328017.1,
INSD:AV533855.1,INSD:DR328011.1,INSD:BP832757.1,
INSD:DR328035.1,INSD:ES032646.1,INSD:BP600965.1,
INSD:ES148717.1,INSD:AV544167.1,INSD:DR328007.1,
INSD:AV822575.1,INSD:CF774363.1,INSD:AV552642.1,
INSD:ES006392.1,INSD:DR328021.1,INSD:DR328008.1,
INSD:ES118744.1,INSD:EL984461.1,INSD:DR328022.1,
INSD:DR328006.1,INSD:DR328003.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY089023.1,INSD:AY034968.1,INSD:AY062974.1,
INSD:BX819008.1,INSD:BX819471.1,INSD:BX818990.1,
INSD:BX821842.1,INSD:BX818855.1"
/note="TRICHOME BIREFRINGENCE-LIKE 39 (TBL39); INVOLVED
IN: biological_process unknown; LOCATED IN: vacuole;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF231, plant (InterPro:IPR004253); BEST
Arabidopsis thaliana protein match is: Plant protein of
unknown function (DUF828) (TAIR:AT2G31110.2); Has 1331
Blast hits to 1312 proteins in 27 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1329;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink)."
/db_xref="Araport:AT2G42570"
/db_xref="TAIR:AT2G42570"
intron_pos 101:2 (1/4)
intron_pos 159:0 (2/4)
intron_pos 217:2 (3/4)
intron_pos 270:2 (4/4)
BEGIN
1 MGFTSRGNPS FLFFFFFFLC LSTVSAYINS TSSNNDEVRR ELASGRCNWF RGNWVYDVKY
61 PLYDPYKCPF IDPQFNCKKY GRPDNAYLKY RWQPSSCSLP RFNGLYFLRR MRGKKIMFVG
121 DSLSTNMWQS LACLIHSWVP NTRYTLIRQK GLASLTFEEY GVTLLLYRTQ FLVDLNVEKV
181 GRVLKLDSIK QGNMWRGMDV LIFNSWHWWT HTEHIQPWDY MEDGNRLYKD MNRLVAFYKG
241 MTTWARWVNA YVDPSKTKVF FNGVSPTHYE GKDWGEPMNS CRSQTQPFYG RKYPGGTPMA
301 WVILNKVMRR LKKPVHWLDI TGLSQLRKDA HPSAFSGNHP GNDCSHWCLP GLPDTWNLLF
361 YSTLFSS
//