LOCUS AEC10022.1 428 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Integrase-type DNA-binding superfamily
protein protein.
ACCESSION CP002685-6340
PROTEIN_ID AEC10022.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G41710"
/gene_synonym="T11A7.19"
/gene_synonym="T11A7_19"
/inference="Similar to RNA sequence,
EST:INSD:EH917362.1,INSD:EL080666.1,INSD:EL141393.1,
INSD:ES168186.1,INSD:AA404776.1,INSD:EL203653.1,
INSD:AU230997.1,INSD:EH991626.1,INSD:DR342201.1,
INSD:AV797557.1,INSD:DR376848.1,INSD:AV820194.1,
INSD:AV525822.1,INSD:EL111435.1,INSD:EL020253.1,
INSD:AI996662.1,INSD:ES151784.1,INSD:EL130089.1,
INSD:AU231389.1,INSD:BP824766.1,INSD:EL064659.1,
INSD:EH971588.1,INSD:EH978130.1,INSD:AV806103.1,
INSD:ES198072.1,INSD:EG448594.1,INSD:AV558109.1,
INSD:BX835529.1"
/inference="similar to RNA sequence, mRNA:INSD:BX821896.1"
/note="Integrase-type DNA-binding superfamily protein;
FUNCTIONS IN: DNA binding, sequence-specific DNA binding
transcription factor activity; INVOLVED IN: regulation of
transcription, DNA-dependent; LOCATED IN: nucleus;
EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding,
integrase-type (InterPro:IPR016177), Pathogenesis-related
transcriptional factor/ERF, DNA-binding
(InterPro:IPR001471); BEST Arabidopsis thaliana protein
match is: Integrase-type DNA-binding superfamily protein
(TAIR:AT3G54320.3); Has 3552 Blast hits to 3060 proteins
in 157 species: Archae - 0; Bacteria - 4; Metazoa - 0;
Fungi - 0; Plants - 3515; Viruses - 2; Other Eukaryotes -
31 (source: NCBI BLink)."
/db_xref="Araport:AT2G41710"
/db_xref="TAIR:AT2G41710"
intron_pos 76:2 (1/8)
intron_pos 104:1 (2/8)
intron_pos 107:1 (3/8)
intron_pos 137:0 (4/8)
intron_pos 161:2 (5/8)
intron_pos 183:2 (6/8)
intron_pos 204:1 (7/8)
intron_pos 411:0 (8/8)
BEGIN
1 MASVSSSDQG PKTEAGCSGG GGGESSETVA ASDQMLLYRG FKKAKKERGC TAKERISKMP
61 PCTAGKRSSI YRGVTRHRWT GRYEAHLWDK STWNQNQNKK GKQVYLGAYD DEEAAARAYD
121 LAALKYWGPG TLINFPVTDY TRDLEEMQNL SREEYLASLR RYPFGRKSSG FSRGIAKYRG
181 LQSRWDASAS RMPGPEYFSN IHYGAGDDRG TEGDFLGSFC LERKIDLTGY IKWWGANKNR
241 QPESSSKASE DANVEDAGTE LKTLEHTSHA TEPYKAPNLG VLCGTQRKEK EISSPSSSSA
301 LSILSQSPAF KSLEEKVLKI QESCNNENDE NANRNIINME KNNGKAIEKP VVSHGVALGG
361 AAALSLQKSM YPLTSLLTAP LLTNYNTLDP LADPILWTPF LPSGSSLTSE VTKTETSCST
421 YSYLPQEK
//