LOCUS AEC10008.1 861 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Nucleoporin interacting component
(Nup93/Nic96-like) family protein protein.
ACCESSION CP002685-6321
PROTEIN_ID AEC10008.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G41620"
/gene_synonym="T32G6.14"
/gene_synonym="T32G6_14"
/inference="Similar to RNA sequence,
EST:INSD:EG433992.1,INSD:EG432460.1,INSD:ES032875.1,
INSD:EG433979.1,INSD:N96228.1,INSD:EG432454.1,
INSD:EG433987.1,INSD:EG432483.1,INSD:EG432491.1,
INSD:BP659606.1,INSD:BP605953.1,INSD:EG432504.1,
INSD:EG433995.1,INSD:EG433975.1,INSD:EG432474.1,
INSD:EG432472.1,INSD:EH888674.1,INSD:EG432475.1,
INSD:EG432487.1,INSD:EG432490.1,INSD:EG432459.1,
INSD:EG432258.1,INSD:AV791049.1,INSD:EG433999.1,
INSD:EG432467.1,INSD:AI993730.1,INSD:BP630815.1,
INSD:ES061600.1,INSD:BP575964.1,INSD:EG432461.1,
INSD:EG432493.1,INSD:EG432505.1,INSD:BE520174.1,
INSD:BE530791.1,INSD:BE520173.1,INSD:BP576192.1,
INSD:ES038317.1,INSD:EG432542.1,INSD:EG432503.1,
INSD:EG432492.1,INSD:EG433998.1,INSD:EG432489.1,
INSD:EG433978.1,INSD:EL228957.1,INSD:EG432468.1,
INSD:BU636232.1,INSD:EL024022.1,INSD:EH863574.1,
INSD:EL075696.1,INSD:EG432510.1,INSD:EG432456.1,
INSD:EL106011.1,INSD:BP781282.1,INSD:BP802229.1,
INSD:EG432488.1,INSD:EG432486.1,INSD:EL152972.1,
INSD:EG432498.1,INSD:EL020683.1,INSD:EG432511.1,
INSD:EL313405.1,INSD:EL989545.1,INSD:EG433988.1,
INSD:ES183160.1,INSD:EG433977.1,INSD:EL292076.1,
INSD:EL114168.1,INSD:ES117761.1,INSD:EG432466.1,
INSD:BP580599.1,INSD:EG432457.1,INSD:EG433997.1,
INSD:EH884745.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY113905.1,INSD:AY034907.1"
/note="Nucleoporin interacting component
(Nup93/Nic96-like) family protein; FUNCTIONS IN: protein
binding; INVOLVED IN: transport; LOCATED IN: nucleolus;
EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15
growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin
interacting component Nup93/Nic96 (InterPro:IPR007231);
BEST Arabidopsis thaliana protein match is: Nucleoporin
interacting component (Nup93/Nic96-like) family protein
(TAIR:AT3G57350.1); Has 357 Blast hits to 350 proteins in
149 species: Archae - 0; Bacteria - 0; Metazoa - 168;
Fungi - 130; Plants - 48; Viruses - 0; Other Eukaryotes -
11 (source: NCBI BLink)."
/db_xref="Araport:AT2G41620"
/db_xref="TAIR:AT2G41620"
intron_pos 35:0 (1/14)
intron_pos 65:2 (2/14)
intron_pos 88:0 (3/14)
intron_pos 108:0 (4/14)
intron_pos 138:0 (5/14)
intron_pos 226:0 (6/14)
intron_pos 258:0 (7/14)
intron_pos 303:0 (8/14)
intron_pos 321:0 (9/14)
intron_pos 349:0 (10/14)
intron_pos 378:0 (11/14)
intron_pos 679:0 (12/14)
intron_pos 739:2 (13/14)
intron_pos 837:0 (14/14)
BEGIN
1 MANDQEMSGW TDLLHSSSKL LEQAAPSSQF PPLQRNLDQL EALSKKLKAK TLRNEAPSQS
61 IAATRLLARE GINAEQLARD LKSFELKTTF EDVFPAEATS VEEYLQQVHE MAMVSAIQEA
121 QKDNVRSFND YMMKVLEEDW RKEKRDFLQS LSRISMLPKT NMIDTSREAH AGQLVPVGSS
181 PRVSSTPGKE LVALANIPIH EKKAYVYGEV VKKLNTSRER GMPFRPAMCF KDAYDTLGAE
241 VTRGKSVNMQ KIWQLVQAIT GEDSAVRQGV SKRMALAIGA RHHLQHGHEK FIMDTIQTHP
301 TQAALGGSVG NLQRIRAFLR IRLRDYGVLD FDSTDARRQP PVDTTWQQIY FCLRTGYYEE
361 AREIARSTRS SQQFAPLLTE WITTDGMVAA ESAAIASEEC EKMLRMGDRL GRTAYDKKKL
421 LLYTIISGSR RQIERILRDL STLFNTIEDF LWFKLSCIRD VTGGSSSVVL NDGLAPYSLD
481 DLQAYLNKFE PSYYTKNGKD PLVYPYVLLL SVQLLPAIMH LSKEAGDGGY NIDAVHIAIS
541 LVDHSVLSEG SGTGHKLSVM DSNAEASSMI RQYGSMFLHH GDLQMTVEYY AQAAATVGGG
601 QLAWSGRSNV DQQRQRNLML KQLLTEILLR ERGIYFLLGA RGSGEEGQLG RFFPDSRLRQ
661 QFLVEAAHQC QEAGLYDKSI ELQKRVGAFS AALETINKCL SEAICSLARG RLDGESRTSG
721 LILAGNDILE TYKYYPEVSL QERERVMEQE TILRELEAIL SIHKLGRLGN HLDALREIAK
781 LPFLHLDPRM PDATADVFQS ASPYFQTCVP DLLKVALTCL DNVPDTDGSI RAMRSKIAGF
841 LASNTHRNWP RDLYEKVARS F
//