LOCUS       AEC09991.1               554 aa    PRT              PLN 23-MAR-2023
DEFINITION  Arabidopsis thaliana WD-40 repeat family protein / small
            nuclear ribonucleoprotein Prp4p-like protein protein.
ACCESSION   CP002685-6291
PROTEIN_ID  AEC09991.1
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 19698289)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 19698289)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE   3  (bases 1 to 19698289)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
FEATURES             Qualifiers
     source          /organism="Arabidopsis thaliana"
                     /mol_type="genomic DNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     protein         /gene="LIS"
                     /locus_tag="AT2G41500"
                     /gene_synonym="EMB2776"
                     /gene_synonym="LACHESIS"
                     /gene_synonym="T26J13.9"
                     /gene_synonym="T26J13_9"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EG483900.1,INSD:AV522390.1,INSD:BX836369.1,
                     INSD:AV549381.1,INSD:BP642531.1,INSD:EH820244.1,
                     INSD:ES094246.1,INSD:EL144334.1,INSD:EG483901.1,
                     INSD:ES059583.1,INSD:AU238529.1,INSD:AV787496.1,
                     INSD:ES201573.1,INSD:EH920138.1,INSD:AU229721.1,
                     INSD:DR379478.1,INSD:BX839446.1,INSD:ES094871.1,
                     INSD:BP617491.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX820736.1,INSD:BT008700.1,INSD:AK229530.1,
                     INSD:BT020589.1"
                     /note="LACHESIS (LIS); CONTAINS InterPro DOMAIN/s: WD40
                     repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site
                     (InterPro:IPR019775), Pre-mRNA processing factor 4 (PRP4)
                     like (InterPro:IPR014906), WD40 repeat
                     (InterPro:IPR001680), Splicing factor motif
                     (InterPro:IPR003648), G-protein beta WD-40 repeat, region
                     (InterPro:IPR020472), WD40 repeat-like-containing domain
                     (InterPro:IPR011046), WD40-repeat-containing domain
                     (InterPro:IPR017986), WD40/YVTN repeat-like-containing
                     domain (InterPro:IPR015943), WD40 repeat, subgroup
                     (InterPro:IPR019781); BEST Arabidopsis thaliana protein
                     match is: Transducin/WD40 repeat-like superfamily protein
                     (TAIR:AT2G05720.1); Has 96331 Blast hits to 36444 proteins
                     in 930 species: Archae - 78; Bacteria - 11869; Metazoa -
                     38307; Fungi - 21059; Plants - 12275; Viruses - 15; Other
                     Eukaryotes - 12728 (source: NCBI BLink)."
                     /db_xref="Araport:AT2G41500"
                     /db_xref="TAIR:AT2G41500"
     intron_pos      31:1 (1/4)
     intron_pos      273:2 (2/4)
     intron_pos      426:0 (3/4)
     intron_pos      492:0 (4/4)
BEGIN
        1 MEPNKDDNVS LAATAQISAP PVLQDASSLP GFSAIPPVVP PSFPPPMAPI PMMPHPPVAR
       61 PPTFRPPVSQ NGGVKTSDSD SESDDEHIEI SEESKQVRER QEKALQDLLV KRRAAAMAVP
      121 TNDKAVRDRL RRLGEPITLF GEQEMERRAR LTQLLTRYDI NGQLDKLVKD HEEDVTPKEE
      181 VDDEVLEYPF FTEGPKELRE ARIEIAKFSV KRAAVRIQRA KRRRDDPDED MDAETKWALK
      241 HAKHMALDCS NFGDDRPLTG CSFSRDGKIL ATCSLSGVTK LWEMPQVTNT IAVLKDHKER
      301 ATDVVFSPVD DCLATASADR TAKLWKTDGT LLQTFEGHLD RLARVAFHPS GKYLGTTSYD
      361 KTWRLWDINT GAELLLQEGH SRSVYGIAFQ QDGALAASCG LDSLARVWDL RTGRSILVFQ
      421 GHIKPVFSVN FSPNGYHLAS GGEDNQCRIW DLRMRKSLYI IPAHANLVSQ VKYEPQEGYF
      481 LATASYDMKV NIWSGRDFSL VKSLAGHESK VASLDITADS SCIATVSHDR TIKLWTSSGN
      541 DDEDEEKETM DIDL
//