LOCUS AEC09984.1 536 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana apurinic endonuclease-redox protein protein.
ACCESSION CP002685-6280
PROTEIN_ID AEC09984.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="ARP"
/locus_tag="AT2G41460"
/gene_synonym="apurinic endonuclease-redox protein"
/gene_synonym="T26J13.5"
/gene_synonym="T26J13_5"
/inference="Similar to RNA sequence,
EST:INSD:EL267068.1,INSD:ES170965.1,INSD:BX834148.1,
INSD:ES138843.1,INSD:ES066887.1,INSD:ES088038.1,
INSD:BX836894.1,INSD:T43976.1,INSD:EL987257.1,
INSD:AI994447.1,INSD:AA395315.1,INSD:BE530237.1,
INSD:ES166828.1,INSD:ES146417.1,INSD:BX837750.1,
INSD:ES076628.1,INSD:EG515722.1,INSD:ES178023.1"
/inference="similar to RNA sequence,
mRNA:INSD:EU517564.1,INSD:X76912.1"
/note="apurinic endonuclease-redox protein (ARP); CONTAINS
InterPro DOMAIN/s: AP endonuclease, family 1, conserved
site (InterPro:IPR020848), DNA-binding SAP
(InterPro:IPR003034), AP endonuclease, family 1
(InterPro:IPR000097), AP endonuclease, family 1, binding
site (InterPro:IPR020847),
Endonuclease/exonuclease/phosphatase (InterPro:IPR005135),
Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST
Arabidopsis thaliana protein match is: C2
calcium/lipid-binding endonuclease/exonuclease/phosphatase
(TAIR:AT3G60950.1); Has 8976 Blast hits to 8966 proteins
in 2340 species: Archae - 119; Bacteria - 5352; Metazoa -
387; Fungi - 388; Plants - 165; Viruses - 2; Other
Eukaryotes - 2563 (source: NCBI BLink)."
/db_xref="Araport:AT2G41460"
/db_xref="TAIR:AT2G41460"
intron_pos 18:2 (1/11)
intron_pos 79:0 (2/11)
intron_pos 110:2 (3/11)
intron_pos 137:1 (4/11)
intron_pos 210:1 (5/11)
intron_pos 318:0 (6/11)
intron_pos 355:0 (7/11)
intron_pos 401:0 (8/11)
intron_pos 417:0 (9/11)
intron_pos 444:0 (10/11)
intron_pos 497:1 (11/11)
BEGIN
1 MNNVLQFGLQ SSAIYVAKFL VVPLRSLRVG SSFVGVGVGT RSFNKRLMSN ATAFSINNSK
61 RKELKIPGAA IDQNCHQMGS DTDRDEMGTL QDDRKEIEAM TVQELRSTLR KLGVPVKGRK
121 QELISTLRLH MDSNLPDQKE TSSSTRSDSV TIKRKISNRE EPTEDECTNS EAYDIEHGEK
181 RVKQSTEKNL KAKVSAKAIA KEQKSLMRTG KQQIQSKEET SSTISSELLK TEEIISSPSQ
241 SEPWTVLAHK KPQKDWKAYN PKTMRPPPLP EGTKCVKVMT WNVNGLRGLL KFESFSALQL
301 AQRENFDILC LQETKLQVKD VEEIKKTLID GYDHSFWSCS VSKLGYSGTA IISRIKPLSV
361 RYGTGLSGHD TEGRIVTAEF DSFYLINTYV PNSGDGLKRL SYRIEEWDRT LSNHIKELEK
421 SKPVVLTGDL NCAHEEIDIF NPAGNKRSAG FTIEERQSFG ANLLDKGFVD TFRKQHPGVV
481 GYTYWGYRHG GRKTNKGWRL DYFLVSQSIA ANVHDSYILP DINGSDHCPI GLILKL
//