LOCUS AEC09860.1 355 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana PRP38 family protein protein.
ACCESSION CP002685-6105
PROTEIN_ID AEC09860.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G40650"
/gene_synonym="T7D17.17"
/gene_synonym="T7D17_17"
/inference="Similar to RNA sequence,
EST:INSD:AV559987.1,INSD:BP602935.1,INSD:ES170408.1,
INSD:BX840563.1,INSD:CF651472.1,INSD:AV566440.1,
INSD:ES031446.1,INSD:AU237270.1,INSD:CF651473.1,
INSD:DR375483.1,INSD:CA781711.1,INSD:AU228307.1,
INSD:EG500232.1,INSD:EG427186.1,INSD:ES097579.1,
INSD:ES179329.1,INSD:EH891324.1,INSD:ES005767.1,
INSD:ES110519.1,INSD:BP784653.1,INSD:ES087084.1,
INSD:EH984343.1,INSD:EH826568.1,INSD:DR233662.1,
INSD:DR233663.1,INSD:BP609054.1"
/inference="similar to RNA sequence,
mRNA:INSD:AK228762.1,INSD:AY087415.1"
/note="PRP38 family protein; CONTAINS InterPro DOMAIN/s:
PRP38 (InterPro:IPR005037); BEST Arabidopsis thaliana
protein match is: SART-1 family (TAIR:AT5G16780.1); Has
71927 Blast hits to 24591 proteins in 1125 species: Archae
- 74; Bacteria - 21911; Metazoa - 26638; Fungi - 6334;
Plants - 3978; Viruses - 317; Other Eukaryotes - 12675
(source: NCBI BLink)."
/db_xref="Araport:AT2G40650"
/db_xref="TAIR:AT2G40650"
intron_pos 97:2 (1/5)
intron_pos 138:1 (2/5)
intron_pos 168:2 (3/5)
intron_pos 209:0 (4/5)
intron_pos 233:2 (5/5)
BEGIN
1 MANRTDPLAK NIRGTNPQNL VEKIVRTKIY QHTFWKEQCF GLTAETLVDK AMELDHLGGT
61 FGGSRKPTPF LCLILKMLQI QPEKEIVVEF IKNDDYKYVR ILGAFYLRLT GTDVDVYRYL
121 EPLYNDYRKV RQKLSDGKFS LTHVDEVIEE LLTKDYSCDI AMPRLKKRWT LEQNGLLEPR
181 KSVLEDDFEE EEEKEENEGI ADGSEDEMDQ RRKSPERERE RDRDRRRDSH RHRDRDYDRD
241 YDMDRDHDRD YERERGHGRD RDRERDRDHY RERDRDRERG RDRERDRRDR ARRRSRSRSR
301 DRKRHETDDV RDREEPKKKK EKKEKMKEDG TDHPNPEIAE MNRLRASLGM KPLRD
//