LOCUS AEC09811.1 404 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Pectin lyase-like superfamily protein protein.
ACCESSION CP002685-6030
PROTEIN_ID AEC09811.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G40310"
/gene_synonym="T7M7.10"
/note="Pectin lyase-like superfamily protein; FUNCTIONS
IN: polygalacturonase activity; INVOLVED IN: carbohydrate
metabolic process; LOCATED IN: endomembrane system;
CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence
factor (InterPro:IPR011050), Pectin lyase fold
(InterPro:IPR012334), Glycoside hydrolase, family 28
(InterPro:IPR000743), Parallel beta-helix repeat
(InterPro:IPR006626); BEST Arabidopsis thaliana protein
match is: Pectin lyase-like superfamily protein
(TAIR:AT4G13760.1); Has 3981 Blast hits to 3959 proteins
in 466 species: Archae - 8; Bacteria - 1108; Metazoa - 14;
Fungi - 1255; Plants - 1474; Viruses - 0; Other Eukaryotes
- 122 (source: NCBI BLink)."
/db_xref="Araport:AT2G40310"
/db_xref="TAIR:AT2G40310"
intron_pos 49:0 (1/3)
intron_pos 153:0 (2/3)
intron_pos 328:0 (3/3)
BEGIN
1 MASIAFVFKV LCVSFLFIFV ASRPTIRPKT FNVQRHGSKP DGKTDNANVF TSIWSRACKR
61 KSGSSKIYVP KGIFYLGGVE FVGPCKNPIE FVIDGTLLAP ANPSDIKQDT WINFRYINNL
121 SISGSGTLDG QGKQSWPLND CHKNLNCPKL AMTMGFAFVN NSNIKDITSL NSKMGHFNFF
181 SVHHFNITGV TITASGDSPN TDGIKMGSCS NMHISNTNIG TGDDCIAILS GTTNLDISNV
241 KCGPGHGISV GSLGKNKDEK DVKNLTVRDV IFNGTSDGIR IKTWESSASK ILVSNFVYEN
301 IQMIDVGKPI NIDQKYCPHP PCEHEQKGES HVQIQDLKLK NIYGTSKNKV AMNLQCSKSF
361 PCKNIELIDI NIKSNGLENS SSIAVCENVD GSMSGKMVPQ HCLN
//