LOCUS AEC09778.1 276 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana light harvesting complex photosystem
II protein.
ACCESSION CP002685-5993
PROTEIN_ID AEC09778.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="LHCB4.3"
/locus_tag="AT2G40100"
/gene_synonym="F27I1.2"
/gene_synonym="F27I1_2"
/gene_synonym="light harvesting complex photosystem II"
/inference="Similar to RNA sequence,
EST:INSD:EL034784.1,INSD:AI995926.1,INSD:BP831979.1,
INSD:EL293298.1,INSD:EL268927.1,INSD:DR377856.1,
INSD:DR266044.1,INSD:DR318511.1,INSD:BP596880.1,
INSD:DR318504.1,INSD:EL290768.1,INSD:AV535821.1,
INSD:DR318521.1,INSD:BP826212.1,INSD:DR318525.1,
INSD:DR318526.1,INSD:BP645592.1,INSD:DR318523.1,
INSD:DR318507.1,INSD:DR318519.1,INSD:DR266043.1,
INSD:EL132129.1,INSD:EL280644.1,INSD:DR318518.1,
INSD:BP817379.1,INSD:AV830768.1,INSD:EL282782.1,
INSD:DR374082.1,INSD:EL257335.1,INSD:DR318506.1,
INSD:EL271024.1,INSD:EL338451.1,INSD:DR266048.1,
INSD:DR318515.1,INSD:EL248109.1,INSD:DR318531.1,
INSD:DR318516.1,INSD:DR318513.1,INSD:ES186372.1,
INSD:BP825423.1,INSD:DR266049.1,INSD:EH912244.1,
INSD:EH897627.1,INSD:DR318510.1,INSD:EH800278.1,
INSD:DR318530.1,INSD:EL080628.1,INSD:EL295875.1,
INSD:DR266045.1,INSD:DR318517.1,INSD:DR318529.1,
INSD:EL003574.1,INSD:DR318505.1,INSD:DR318514.1,
INSD:EL275937.1,INSD:N37230.1,INSD:EH946613.1,
INSD:DR318509.1,INSD:DR318524.1,INSD:DR266047.1,
INSD:EH852992.1,INSD:DR318527.1,INSD:DR318508.1,
INSD:EH907579.1,INSD:EH920551.1,INSD:DR266046.1,
INSD:DR318520.1,INSD:DR318512.1,INSD:EL337383.1,
INSD:DR318528.1,INSD:EL337455.1,INSD:DR318522.1,
INSD:T76680.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY096735.1,INSD:AY088398.1,INSD:AY070392.1,
INSD:AF134128.1,INSD:BX842453.1"
/note="light harvesting complex photosystem II (LHCB4.3);
FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response
to blue light, response to red light, response to far red
light, photosynthesis; LOCATED IN: light-harvesting
complex, thylakoid, chloroplast thylakoid membrane,
chloroplast, membrane; EXPRESSED IN: 28 plant structures;
EXPRESSED DURING: 14 growth stages; CONTAINS InterPro
DOMAIN/s: Chlorophyll A-B binding protein
(InterPro:IPR001344); BEST Arabidopsis thaliana protein
match is: light harvesting complex photosystem II
(TAIR:AT5G01530.1); Has 2254 Blast hits to 2193 proteins
in 216 species: Archae - 0; Bacteria - 0; Metazoa - 3;
Fungi - 0; Plants - 1937; Viruses - 0; Other Eukaryotes -
314 (source: NCBI BLink)."
/db_xref="Araport:AT2G40100"
/db_xref="TAIR:AT2G40100"
intron_pos 172:0 (1/1)
BEGIN
1 MATTTAAAAS GIFGIRIQDP RPGTGRVQAR FGFSFGKKKP APPPKKSRQV QDDGDRLVWF
61 PGANPPEWLD GSMIGDRGFD PFGLGKPAEY LQYDFDGLDQ NLAKNVAGDI IGIIQESSEI
121 KPTPFQPYTE VFGIQRFREC ELIHGRWAML GTLGAIAVEA LTGIAWQDAG KVELVEGSSY
181 LGQPLPFSLT TLIWIEVLVV GYIEFQRNSE LDPEKRIYPG GYFDPLGLAA DPEKLDTLKL
241 AEIKHSRLAM VAFLIFALQA AFTGKGPVSF LATFNN
//