LOCUS AEC09601.1 112 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana nuclear factor Y, subunit B1 protein.
ACCESSION CP002685-5746
PROTEIN_ID AEC09601.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="NF-YB1"
/locus_tag="AT2G38880"
/gene_synonym="''nuclear factor Y"
/gene_synonym="ATHAP3"
/gene_synonym="ATNF-YB1"
/gene_synonym="HAP3"
/gene_synonym="HAP3A"
/gene_synonym="HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3"
/gene_synonym="HEME ACTIVATOR PROTEIN (YEAST) HOMOLOG 3A"
/gene_synonym="nuclear factor Y"
/gene_synonym="NUCLEAR FACTOR Y SUBUNIT B1"
/gene_synonym="subunit B1"
/gene_synonym="subunit B1''"
/gene_synonym="T7F6.5"
/gene_synonym="T7F6_5"
/inference="Similar to RNA sequence,
EST:INSD:CK119712.1,INSD:AI992738.1,INSD:ES036866.1,
INSD:DR302187.1,INSD:ES108761.1,INSD:H37368.1,
INSD:ES088321.1,INSD:ES055486.1,INSD:T45165.1,
INSD:T46739.1,INSD:BP865869.1,INSD:EL104888.1,
INSD:ES066762.1,INSD:EG456507.1,INSD:DR302185.1,
INSD:EL063405.1"
/inference="similar to RNA sequence, mRNA:INSD:BT005536.1"
/note="''nuclear factor Y, subunit B1'' (NF-YB1);
FUNCTIONS IN: sequence-specific DNA binding transcription
factor activity; INVOLVED IN: response to water
deprivation, regulation of transcription, DNA-dependent;
LOCATED IN: CCAAT-binding factor complex, nucleus;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; CONTAINS InterPro DOMAIN/s: Transcription
factor, CBFA/NFYB, DNA topoisomerase (InterPro:IPR003957),
Transcription factor CBF/NF-Y/archaeal histone
(InterPro:IPR003958), Histone-fold (InterPro:IPR009072),
Transcription factor, NFYB/HAP3, conserved site
(InterPro:IPR003956); BEST Arabidopsis thaliana protein
match is: nuclear factor Y, subunit B3 (TAIR:AT4G14540.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink)."
/db_xref="Araport:AT2G38880"
/db_xref="TAIR:AT2G38880"
intron_pos 67:2 (1/2)
intron_pos 112:1 (2/2)
BEGIN
1 MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF
61 ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP LKIYLARYRE VW
//