LOCUS AEC08831.1 404 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana RNA-binding (RRM/RBD/RNP motifs)
family protein protein.
ACCESSION CP002685-4723
PROTEIN_ID AEC08831.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /locus_tag="AT2G33410"
/gene_synonym="F4P9.18"
/gene_synonym="F4P9_18"
/inference="Similar to RNA sequence,
EST:INSD:EL331765.1,INSD:BP589157.1,INSD:EL299874.1,
INSD:AV534427.1,INSD:EL184339.1,INSD:ES123919.1,
INSD:EL214143.1,INSD:ES052710.1,INSD:AV814402.1,
INSD:DR276783.1,INSD:BP815640.1,INSD:AV532378.1,
INSD:CB257491.1,INSD:BP831713.1,INSD:ES051922.1,
INSD:EL307268.1,INSD:EL249519.1,INSD:AV807417.1,
INSD:ES039153.1,INSD:ES189440.1,INSD:BP593776.1,
INSD:EL307379.1,INSD:BP646307.1,INSD:T76385.1,
INSD:ES006098.1,INSD:EH993107.1,INSD:BP813767.1,
INSD:BP657376.1,INSD:EH803833.1,INSD:EL170046.1,
INSD:BP638493.1,INSD:BP864797.1,INSD:EG428611.1,
INSD:ES003007.1,INSD:AV821040.1,INSD:ES064062.1,
INSD:BP832393.1,INSD:DR276784.1,INSD:ES046031.1,
INSD:BP855269.1,INSD:ES197054.1,INSD:EH921769.1,
INSD:BP591898.1,INSD:EL261997.1,INSD:AV832378.1,
INSD:DR379911.1,INSD:ES092956.1,INSD:BP839125.1,
INSD:EH801655.1,INSD:EL210072.1,INSD:EL070903.1,
INSD:ES101411.1,INSD:EL154937.1,INSD:ES040915.1,
INSD:ES073976.1,INSD:EL225003.1,INSD:EH963007.1,
INSD:EL033165.1,INSD:BP599668.1,INSD:ES146078.1,
INSD:ES149367.1,INSD:ES030562.1,INSD:EL230657.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY136298.1,INSD:BT000416.1,INSD:BX821560.1,
INSD:BX820181.1,INSD:BX819713.1"
/note="RNA-binding (RRM/RBD/RNP motifs) family protein;
FUNCTIONS IN: RNA binding, nucleotide binding, nucleic
acid binding; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 24
plant structures; EXPRESSED DURING: 14 growth stages;
CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1
(InterPro:IPR000504), Nucleotide-binding, alpha-beta plait
(InterPro:IPR012677); BEST Arabidopsis thaliana protein
match is: RNA-binding (RRM/RBD/RNP motifs) family protein
(TAIR:AT4G14300.1); Has 110468 Blast hits to 48661
proteins in 2208 species: Archae - 78; Bacteria - 27657;
Metazoa - 45421; Fungi - 8288; Plants - 12503; Viruses -
709; Other Eukaryotes - 15812 (source: NCBI BLink)."
/db_xref="Araport:AT2G33410"
/db_xref="TAIR:AT2G33410"
intron_pos 75:0 (1/1)
BEGIN
1 MESDQGKLFI GGISWDTDEN LLREYFSNFG EVLQVTVMRE KATGRPRGFG FVAFSDPAVI
61 DRVLQDKHHI DNRDVDVKRA MSREEQSPAG RSGTFNASRN FDSGANVRTK KIFVGGLPPA
121 LTSDEFRAYF ETYGPVSDAV IMIDQTTQRP RGFGFVSFDS EDSVDLVLHK TFHDLNGKQV
181 EVKRALPKDA NPGIASGGGR GSGGAGGFPG YGGSGGSGYE GRVDSNRYMQ PQNTGSGYPP
241 YGGSGYGTGY GYGSNGVGYG GFGGYGNPAG APYGNPSVPG AGFGSGPRSS WGAQAPSGYG
301 NVGYGNAAPW GGSGGPGSAV MGQAGASAGY GSQGYGYGGN DSSYGTPSAY GAVGGRSGNM
361 PNNHGGGGYA DALDGSGGYG NHQGNNGQAG YGGGYGSGRQ AQQQ
//