LOCUS AEC08766.1 675 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana Transducin/WD40 repeat-like superfamily
protein protein.
ACCESSION CP002685-4623
PROTEIN_ID AEC08766.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="COP1"
/locus_tag="AT2G32950"
/gene_synonym="ARABIDOPSIS THALIANA CONSTITUTIVE
PHOTOMORPHOGENIC 1"
/gene_synonym="ATCOP1"
/gene_synonym="CONSTITUTIVE PHOTOMORPHOGENIC 1"
/gene_synonym="DEETIOLATED MUTANT 340"
/gene_synonym="DET340"
/gene_synonym="EMB168"
/gene_synonym="EMBRYO DEFECTIVE 168"
/gene_synonym="FUS1"
/gene_synonym="FUSCA 1"
/gene_synonym="T21L14.11"
/gene_synonym="T21L14_11"
/inference="Similar to RNA sequence,
EST:INSD:ES004009.1,INSD:EG462599.1,INSD:ES156019.1,
INSD:DR241545.1,INSD:EH861472.1,INSD:EL260817.1,
INSD:EG462603.1,INSD:AW004507.1,INSD:EG462600.1,
INSD:ES037985.1,INSD:ES002237.1,INSD:BP809159.1,
INSD:BP828813.1,INSD:ES019000.1,INSD:AV796149.1,
INSD:BP617808.1,INSD:EH900134.1,INSD:AV799098.1,
INSD:BP811397.1,INSD:EL980497.1,INSD:BX834867.1,
INSD:ES027751.1,INSD:EH834553.1,INSD:ES101683.1,
INSD:BX838043.1,INSD:BP621123.1,INSD:EL967170.1,
INSD:ES075116.1,INSD:BP618464.1,INSD:ES087248.1,
INSD:AV800082.1,INSD:ES185009.1,INSD:EL307742.1,
INSD:BP621110.1,INSD:EL032748.1,INSD:EH955284.1,
INSD:ES189907.1,INSD:DR241546.1,INSD:EL332303.1,
INSD:CA781816.1,INSD:EL989971.1,INSD:ES063928.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX820137.1,INSD:L24437.1,INSD:BT025337.1,
INSD:BX822043.1"
/note="CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1); CONTAINS
InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782),
Zinc finger, RING-type, conserved site
(InterPro:IPR017907), Zinc finger, RING-type
(InterPro:IPR001841), WD40 repeat, conserved site
(InterPro:IPR019775), WD40 repeat (InterPro:IPR001680),
WD40 repeat-like-containing domain (InterPro:IPR011046),
WD40-repeat-containing domain (InterPro:IPR017986), Zinc
finger, C3HC4 RING-type (InterPro:IPR018957), WD40/YVTN
repeat-like-containing domain (InterPro:IPR015943), WD40
repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis
thaliana protein match is: SPA1-related 2
(TAIR:AT4G11110.1); Has 42218 Blast hits to 27649 proteins
in 756 species: Archae - 30; Bacteria - 4454; Metazoa -
17716; Fungi - 8958; Plants - 5306; Viruses - 46; Other
Eukaryotes - 5708 (source: NCBI BLink)."
/db_xref="Araport:AT2G32950"
/db_xref="TAIR:AT2G32950"
intron_pos 107:0 (1/12)
intron_pos 133:0 (2/12)
intron_pos 185:0 (3/12)
intron_pos 302:0 (4/12)
intron_pos 354:2 (5/12)
intron_pos 376:2 (6/12)
intron_pos 403:0 (7/12)
intron_pos 455:0 (8/12)
intron_pos 488:0 (9/12)
intron_pos 523:0 (10/12)
intron_pos 583:0 (11/12)
intron_pos 620:0 (12/12)
BEGIN
1 MEEISTDPVV PAVKPDPRTS SVGEGANRHE NDDGGSGGSE IGAPDLDKDL LCPICMQIIK
61 DAFLTACGHS FCYMCIITHL RNKSDCPCCS QHLTNNQLYP NFLLDKLLKK TSARHVSKTA
121 SPLDQFREAL QRGCDVSIKE VDNLLTLLAE RKRKMEQEEA ERNMQILLDF LHCLRKQKVD
181 ELNEVQTDLQ YIKEDINAVE RHRIDLYRAR DRYSVKLRML GDDPSTRNAW PHEKNQIGFN
241 SNSLSIRGGN FVGNYQNKKV EGKAQGSSHG LPKKDALSGS DSQSLNQSTV SMARKKRIHA
301 QFNDLQECYL QKRRQLADQP NSKQENDKSV VRREGYSNGL ADFQSVLTTF TRYSRLRVIA
361 EIRHGDIFHS ANIVSSIEFD RDDELFATAG VSRCIKVFDF SSVVNEPADM QCPIVEMSTR
421 SKLSCLSWNK HEKNHIASSD YEGIVTVWDV TTRQSLMEYE EHEKRAWSVD FSRTEPSMLV
481 SGSDDCKVKV WCTRQEASVI NIDMKANICC VKYNPGSSNY IAVGSADHHI HYYDLRNISQ
541 PLHVFSGHKK AVSYVKFLSN NELASASTDS TLRLWDVKDN LPVRTFRGHT NEKNFVGLTV
601 NSEYLACGSE TNEVYVYHKE ITRPVTSHRF GSPDMDDAEE EAGSYFISAV CWKSDSPTML
661 TANSQGTIKV LVLAA
//