LOCUS AEC08614.1 1316 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DNA repair-recombination protein
(RAD50) protein.
ACCESSION CP002685-4421
PROTEIN_ID AEC08614.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="RAD50"
/locus_tag="AT2G31970"
/gene_synonym="ATRAD50"
/gene_synonym="DNA REPAIR-RECOMBINATION PROTEIN"
/gene_synonym="F22D22.28"
/gene_synonym="F22D22_28"
/inference="Similar to RNA sequence,
EST:INSD:ES200597.1,INSD:EH824395.1,INSD:DR360490.1,
INSD:EH813100.1,INSD:ES161065.1,INSD:AV828863.1,
INSD:ES151260.1,INSD:ES161522.1,INSD:ES055231.1,
INSD:AV803103.1,INSD:BP790177.1,INSD:ES121160.1,
INSD:DR360489.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF168748.1,INSD:AY139771.1,INSD:BT005823.1,
INSD:AK221478.1"
/note="RAD50; FUNCTIONS IN: zinc ion binding, ATP binding,
nuclease activity; INVOLVED IN: DNA repair, double-strand
break repair, telomere capping, mitotic recombination,
telomere maintenance; LOCATED IN: nucleus, Mre11 complex,
cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED
DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Zinc
hook, Rad50 (InterPro:IPR013134), Rad50 zinc hook
(InterPro:IPR007517), Recombination/repair protein Rad50
(InterPro:IPR004584); Has 105617 Blast hits to 56308
proteins in 2913 species: Archae - 1820; Bacteria - 19240;
Metazoa - 45759; Fungi - 8381; Plants - 4805; Viruses -
470; Other Eukaryotes - 25142 (source: NCBI BLink)."
/db_xref="Araport:AT2G31970"
/db_xref="TAIR:AT2G31970"
intron_pos 42:0 (1/26)
intron_pos 71:0 (2/26)
intron_pos 127:0 (3/26)
intron_pos 185:2 (4/26)
intron_pos 224:0 (5/26)
intron_pos 300:1 (6/26)
intron_pos 360:0 (7/26)
intron_pos 417:0 (8/26)
intron_pos 452:0 (9/26)
intron_pos 488:0 (10/26)
intron_pos 558:2 (11/26)
intron_pos 589:2 (12/26)
intron_pos 632:1 (13/26)
intron_pos 670:2 (14/26)
intron_pos 714:0 (15/26)
intron_pos 784:0 (16/26)
intron_pos 853:2 (17/26)
intron_pos 921:0 (18/26)
intron_pos 977:2 (19/26)
intron_pos 1086:0 (20/26)
intron_pos 1128:0 (21/26)
intron_pos 1145:2 (22/26)
intron_pos 1196:0 (23/26)
intron_pos 1217:0 (24/26)
intron_pos 1261:2 (25/26)
intron_pos 1304:2 (26/26)
BEGIN
1 MSTVDKMLIK GIRSFDPENK NVVTFFRPLT LIVGANGAGK TTIIECLKVS CTGELPPNAR
61 SGHSFIHDPK VAGETETKAQ IKLRFKTAAG KDVVCIRSFQ LTQKASKMEY KAIESVLQTI
121 NPHTGEKVCL SYRCADMDRE IPALMGVSKA ILENVIFVHQ DESNWPLQDP STLKKKFDDI
181 FSATRYTKAL EVIKKLHKDQ AQEIKTFKLK LENLQTLKDA AYKLRESIAQ DQERTESSKV
241 QMLELETSVQ KVDAEVHNKE MMLKDLRKLQ DQVSIKTAER STLFKEQQRQ YAALPEENED
301 TIEELKEWKS KFEERLALLG TKIRKMEREM VDTETTISSL HNAKTNYMLE ISKLQTEAEA
361 HMLLKNERDS TIQNIFFHYN LGNVPSTPFS TEVVLNLTNR IKSRLGELEM DLLDKKKSNE
421 TALSTAWDCY MDANDRWKSI EAQKRAKDEI KMGISKRIEE KEIERDSFEF EISTVDVKQT
481 DEREKQVQVE LERKTKQNSE RGFESKIEQK QHEIYSLEHK IKTLNRERDV MAGDAEDRVK
541 LSLKKTEQEN LKKKHKKIID ECKDRIRGVL KGRLPPEKDM KREIVQALRS IEREYDDLSL
601 KSREAEKEVN MLQMKIQEVN NSLFKHNKDT ESRKRYIESK LQALKQESVT IDAYPKLLES
661 AKDKRDDRKR EYNMANGMRQ MFEPFEKRAR QEHSCPCCER SFTADEEASF IKKQRVKASS
721 TGEHLKALAV ESSNADSVFQ QLDKLRAVFE EYSKLTTEII PLAEKTLQEH TEELGQKSEA
781 LDDVLGISAQ IKADKDSIEA LVQPLENADR IFQEIVSYQK QIEDLEYKLD FRGLGVKTME
841 EIQSELSSLQ SSKDKLHGEL EKLRDDQIYM ERDISCLQAR WHAVREEKAK AANLLRDVTK
901 AEEDLERLAE EKSQLDLDVK YLTEALGPLS KEKEQLLSDY NDMKIRRNQE YEELAEKKRN
961 YQQEVEALLK ASYKINEYHD LKKGERLDDI QEKQRLSDSQ LQSCEARKNE LAGELNRNKD
1021 LMRNQDQLRR NIEDNLNYRT TKAKVEELTR EIESLEEQIL NIGGIAAVEA EIVKILRERE
1081 RLLSELNRCR GTVSVYESSI SKNRVELKQA QYKDIDKRHF DQLIQLKTTE MANKDLDRYY
1141 NALDKALMRF HTMKMEEINK IIRELWQQTY RGQDMDYIRI HSDSEGAGTR SYSYKVLMQT
1201 GDTELEMRGR CSAGQKVLAS LIIRLALAET FCLNCGILAL DEPTTNLDGP NSESLAGALL
1261 RIMEDRKGQE NFQLIVITHD ERFAQMIGQR QHAEKYYRVA KDDMQHSIIE AQEIFD
//