LOCUS AEC08550.1 377 aa PRT PLN 23-MAR-2023
DEFINITION Arabidopsis thaliana DNA glycosylase superfamily protein protein.
ACCESSION CP002685-4326
PROTEIN_ID AEC08550.1
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 19698289)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 19698289)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
REFERENCE 3 (bases 1 to 19698289)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
FEATURES Qualifiers
source /organism="Arabidopsis thaliana"
/mol_type="genomic DNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
protein /gene="ATNTH1"
/locus_tag="AT2G31450"
/gene_synonym="T28P16.6"
/gene_synonym="T28P16_6"
/inference="Similar to RNA sequence,
EST:INSD:EH885681.1,INSD:DR251792.1,INSD:ES112115.1,
INSD:DR251794.1,INSD:DR251798.1,INSD:EL312158.1,
INSD:DR380559.1,INSD:AV790013.1,INSD:DR251797.1,
INSD:EH829618.1,INSD:BP796779.1,INSD:DR251800.1"
/inference="similar to RNA sequence,
mRNA:INSD:AY063851.1,INSD:BX819360.1,INSD:AY091229.1"
/note="ATNTH1; CONTAINS InterPro DOMAIN/s:
Helix-hairpin-helix motif (InterPro:IPR000445),
Helix-hairpin-helix DNA-binding motif, class 1
(InterPro:IPR003583), Endonuclease III, iron-sulphur
binding site (InterPro:IPR004035), DNA glycosylase
(InterPro:IPR011257), Endonuclease III-like, iron-sulphur
cluster loop motif (InterPro:IPR003651), Endonuclease III,
conserved site-2 (InterPro:IPR004036), HhH-GPD domain
(InterPro:IPR003265); BEST Arabidopsis thaliana protein
match is: endonuclease III 2 (TAIR:AT1G05900.2); Has 14133
Blast hits to 14127 proteins in 2683 species: Archae -
365; Bacteria - 9377; Metazoa - 224; Fungi - 192; Plants -
158; Viruses - 0; Other Eukaryotes - 3817 (source: NCBI
BLink)."
/db_xref="Araport:AT2G31450"
/db_xref="TAIR:AT2G31450"
intron_pos 54:1 (1/10)
intron_pos 92:0 (2/10)
intron_pos 113:1 (3/10)
intron_pos 129:1 (4/10)
intron_pos 169:0 (5/10)
intron_pos 191:1 (6/10)
intron_pos 222:0 (7/10)
intron_pos 268:0 (8/10)
intron_pos 303:0 (9/10)
intron_pos 331:0 (10/10)
BEGIN
1 MILLVNGGAA TSIHPNAARF YRIGTMSRQI HGAVSSSKHI SLKTQHPLSD SNSAYGASGS
61 ETRVYTRKKR LKQEPFEPLE KYSGKGVNTH KLCGLPDIED FAYKKTIGSP SSSRSTETSI
121 TVTSVKTAGY PPENWVEVLE GIRQMRSSED APVDSMGCDK AGSFLPPTER RFAVLLGALL
181 SSQTKDQVNN AAIHRLHQNG LLTPEAVDKA DESTIKELIY PVGFYTRKAT YMKKIARICL
241 VKYDGDIPSS LDDLLSLPGI GPKMAHLILH IAWNDVQGIC VDTHVHRICN RLGWVSRPGT
301 KQKTTSPEET RVALQQWLPK EEWVAINPLL VGFGQMICTP IRPRCEACSV SKLCPAAFKE
361 TSSPSSKLKK SNRSKEP
//